Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2435 ATGGGAAGAGCTCCATGTTGTGACAAAGCTAACGTGAAAAGAGGCCCTTGGTCTCCTGAAGAGGATGAAACCCTCAAAAACTATCTCAAGAAACATGGCACTGCTGGTAACTGGATTACTCTCCCACAAAAAGCAGGCCTTAAGCGCTGTGGGAAGAGTTGTCGTTTGAGATGGCTGAACTATCTCAGGCCTCATATCAAGCATGGAGGCTTCACTGATGAGGAAGACCAAGTTATCTGCACCCTTTATGCCACCATCGGAAGCAGGCAAAATGCCTTTGTTGTTTTGATTGTTCATTCCTTATGCCATTACATATCATATCACCAAGTGAAAATGGTGTGGTTTTTTTGGGGGGTTAGGTGGTCCCTTATAGCTGCTCAGCTACCTGGGAGAACAGACAATGATGTGAAAAACCATTGGAACACCAAGTTAAAGAAAAAGTTTTTTGCAGCAAACACCAATGCCAATGGCAATACTATTTGTCCACAGTTCTCAACTTCCACTACTCCTCAGAACTCAGCTGAGTCTCATCATGTGTTAGCTTTGGAGCAAACACCAACTTCAGTTCCTTTACCATTGCCTTTAGGATCCGATGTTTCAGGTCTTGGAAGCAGTGCTTGTAGTGTACCACTGCCCAATGAAGTTTCATTTCTTGCAAATTCAGCTTCCTTGGTAAAAGAGGAGAATGAGACGACCCAATGGTTTGGCTACCATGACAATATTGGAGGCGAAGATGAAGCATTTTTGCTTGATTTTGTGTATGAAGATATGCTGCATAATGGGTTTGTTTCACAAGAAAAAAGCAGCCAAGTTGCCCCATCATCATTTGGCTAA 834 0.4317 MGRAPCCDKANVKRGPWSPEEDETLKNYLKKHGTAGNWITLPQKAGLKRCGKSCRLRWLNYLRPHIKHGGFTDEEDQVICTLYATIGSRQNAFVVLIVHSLCHYISYHQVKMVWFFWGVRWSLIAAQLPGRTDNDVKNHWNTKLKKKFFAANTNANGNTICPQFSTSTTPQNSAESHHVLALEQTPTSVPLPLPLGSDVSGLGSSACSVPLPNEVSFLANSASLVKEENETTQWFGYHDNIGGEDEAFLLDFVYEDMLHNGFVSQEKSSQVAPSSFG 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2435 277 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Aed5g2435 277 SUPERFAMILY Homeodomain-like 14 145 IPR009057 -
Aed5g2435 277 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 117 148 IPR017930 -
Aed5g2435 277 CDD SANT 16 62 IPR001005 -
Aed5g2435 277 Pfam Myb-like DNA-binding domain 71 142 IPR001005 -
Aed5g2435 277 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Aed5g2435 277 ProSiteProfiles Myb-like domain profile. 63 144 IPR001005 -
Aed5g2435 277 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 66 IPR017930 -
Aed5g2435 277 PANTHER TRANSCRIPTION FACTOR RAX3 1 205 - -
Aed5g2435 277 CDD SANT 120 144 IPR001005 -
Aed5g2435 277 Gene3D - 70 147 - -
Aed5g2435 277 Gene3D - 7 68 - -
Aed5g2435 277 PANTHER OS09G0431300 PROTEIN 1 205 - -
Aed5g2435 277 SMART sant 13 64 IPR001005 -
Aed5g2435 277 SMART sant 67 146 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2435 Aed-Chr5 25686085 25687304 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2435 1 156 MYB Transcription Factor Family AT5G57620 60.897 3.20e-65 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aed5g2435 Myb_DNA-binding 3.5e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2435 K09422 - gmx:778160 266.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g2435 5 25686085 25687304 Aed5g2435 5 25686085 25687304 ECH