Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2428 ATGGGGAGGAGGATACTGAACGATGCGTTGAGGAGTATGGTGAATGCAGAGAGGAGAGGGAAAGCTATGGTGGAACTCAAGCCAATCTCCACTGTTATGTCTTCCTTTCTCCGAATCATGAAACACCATGGGTATATCAAGGACTTTCAAGTCTATGATCCACATAGAGTGGGGAGGATAACGGTTGAACTACAAGGTAGGATTAACGATTGCAAGGCCCTTACATTCCGAAAGGACCTCAAGGCAAGGGATATTGAACCCTACAGATTCCAGACTCTTCCAACACATCAGTGGGGTTATGTTGTGATCACAACTCCTGATGGTATTTTGGATCACGAAGAGGCCATGAAAAGGAATGTAGGTGGCCAGGTTCTTGGTTACTTTCACTAA 390 0.4538 MGRRILNDALRSMVNAERRGKAMVELKPISTVMSSFLRIMKHHGYIKDFQVYDPHRVGRITVELQGRINDCKALTFRKDLKARDIEPYRFQTLPTHQWGYVVITTPDGILDHEEAMKRNVGGQVLGYFH 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2428 129 Gene3D - 69 129 - -
Aed5g2428 129 PANTHER 40S RIBOSOMAL PROTEIN S15A-5 1 129 - -
Aed5g2428 129 SUPERFAMILY Ribosomal protein S8 3 129 IPR035987 GO:0003735|GO:0005840|GO:0006412
Aed5g2428 129 Pfam Ribosomal protein S8 6 127 IPR000630 GO:0003735|GO:0005840|GO:0006412
Aed5g2428 129 PANTHER 40S RIBOSOMAL PROTEIN S15A 1 129 IPR000630 GO:0003735|GO:0005840|GO:0006412
Aed5g2428 129 Gene3D - 2 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2428 Aed-Chr5 25649640 25651303 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2428 1 129 Cytoplasmic Ribosomal Protein Gene Family AT4G29430 82.946 1.05e-80 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2428 K02957 - gmx:100792186 248.44