Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2409 ATGTTGAAGAAAAATGAAATCACTGGACGCAGGCGCAGACAAAAAACATTGAAAACTAGTAAACCTAGCAAAAGAAAAGAAAAGGGATTGGCGAGTGCAGCGATGGCGTTATCCCTATCTACCCACTGTTCTCCCACCGTTAACCCTCTCCGAGGATCCAATTTCTCCACCCTCCGCCGTGTCAACCACCGCGTTTGCGTTGCCAGCGCCGCCACTCCCCTCCTCCAAGTCAATGACTTGAGAGCCAAGATTGTCGAGTCCAACATCGAGATTCTCCACGGCGTTAACCTCACCGTCAACCAAGGAGAGGTCCACGCCATCATGGGCAAAAACGGTTCCGGCAAAAGCACTTTCGCCAAGGTTCTTGTGGGGCACCCGGATTATGAAGTAACCGGAGGCAGTGTTGTTTTCAAAGGGGAGAATTTGCTTGAAATGGAACCTGAAGAAAGGTCTCTCGCGGGTCTCTTCATGAGTTTTCAATCCCCTGTTGAAATCCCCGGTGTTTCCAACAATGACTTTCTCATCATGGCCTACAATGCTCGAAGAAAAAAACTTGGTCTAAAAGAGCATGGAGCTCTCGAGTGTTTCACTTACATGATGGAGAAGCTTCAGCTTGTTAACATGAAGACTGAATTTCTCAATAGGAATGTGAACGAAGGGTTTAGTGGTGGGGAACGCAAGCGCAATGAAATCTTGCAGCTCGCTGTTTTGGAGGCAGACATGGCTATTTTGGATGAGATTGATTCTGGGTTGGATGTTGATGCGCTCAGGGATGTTACCAATGCTGTTAATAGGATTCTCACCCCGCAAAAATCTTTGTTGATGATAACTCATTATAGACGGATTCTGGATCTTTTGAATCCTACACATGTCCATGTTATGGACAATGGGAGAATTGCAAGGACAGGCGACATTTCAGTGGTAGAAGCTATTGAGGCAGACGGATATGAAACAGGCTCTGCTTTAACATAA 972 0.465 MLKKNEITGRRRRQKTLKTSKPSKRKEKGLASAAMALSLSTHCSPTVNPLRGSNFSTLRRVNHRVCVASAATPLLQVNDLRAKIVESNIEILHGVNLTVNQGEVHAIMGKNGSGKSTFAKVLVGHPDYEVTGGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVSNNDFLIMAYNARRKKLGLKEHGALECFTYMMEKLQLVNMKTEFLNRNVNEGFSGGERKRNEILQLAVLEADMAILDEIDSGLDVDALRDVTNAVNRILTPQKSLLMITHYRRILDLLNPTHVHVMDNGRIARTGDISVVEAIEADGYETGSALT 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2409 323 TIGRFAM sufC: FeS assembly ATPase SufC 75 317 IPR010230 GO:0005524
Aed5g2409 323 SMART AAA_5 101 298 IPR003593 -
Aed5g2409 323 PANTHER ABC TRANSPORTER I FAMILY MEMBER 6, CHLOROPLASTIC 36 318 IPR010230 GO:0005524
Aed5g2409 323 CDD ABC_FeS_Assembly 75 316 IPR010230 GO:0005524
Aed5g2409 323 MobiDBLite consensus disorder prediction 1 22 - -
Aed5g2409 323 Pfam ABC transporter 92 246 IPR003439 GO:0005524
Aed5g2409 323 MobiDBLite consensus disorder prediction 1 28 - -
Aed5g2409 323 ProSitePatterns ABC transporters family signature. 221 235 IPR017871 GO:0005524
Aed5g2409 323 Gene3D - 74 319 IPR027417 -
Aed5g2409 323 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 75 321 IPR003439 GO:0005524
Aed5g2409 323 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 73 306 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2409 Aed-Chr5 25503020 25506226 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2409 88 303 Calmodulin-binding Proteins AT2G36910 23.144 2.16e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2409 K09013 - gmx:100811883 498.819