Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2408 ATGGAAGACTATGACAGTTACATAGCACAGAATGATACTTGTTCGCGGGAAAAATTTCGTGCAGGTGGTGGAAAAGTTTTATCGCGAGTTGCTGCTGCTGCTGCTGCTGCAAGAAACGGTTCTTCAACTTCAAGTTTCGACATGGCCGTGACGAGGAATGTTAAGAAAAATCAAAAGCGTAAAGGTCTTCAGGAGCTGTTTACAACCGATTACCTTGTGAACAACGTGCTACGGAAGGATGGTCCTGCTCTTGGTCGGGAATTTGATTTTCTTCCTTCAGGACCCAAGTATTTCACTTCTGCTTGTCAAGAGGACCAAGGATCCTCCAAAAGGAAGAAGGTGCCTTCTACTATTCTGAGAAAGCTTTTTGATGTTTCTTATTACATTCCTTTGCATCTGTCACAACTCCTATTTCCTCAGGTTTCTAACAGTGCAATTCGAAGCCTTGCCGATTGTAATAAGAAAGCACCTGTGAAGAAACATGGTATTGGCAAAGGTCTGATGACAGTTTGGAGGGCAACAAATCCTGATGTGGGAGGCCTTCCATTTGGTTTTGGCGTTGCTGGCCAAGAAGTTCCTCTAATCTCAAATTTTACAGGACAGAAACCAGTCAGTGAGAACAACGGGTCACGGAAAACAGTAAACAGGGCTGGAATGCCAAAAAATAAAATGCAGAATAAGAGAAATAAATTGCAGGATAAGAGGAAACCTACCATGCAAAGAAGAGTGGGGGAATTGAACGTAAATGTGACTCAGAATCAGTCACCAAAGGAAAAATGTGAACTAGCTTTGGATAGTGCAATATCTAAGGAGGGAGTTGATCGAGTTTCAATGTTATTTGATGATGAAGAGCTAGAGCTGAGAGAGTTACAAGAAAGAACCAATCTGTTTGTGTGTTCTGATCATCTTGCTGCCAGTGGAATGCTTGGCTGCTCTCTTTGTAAAGCATTGGTTTGCTTTCTTTGTGTTTCTCCTGGTGATGGTTTCTCTCATAGCTCAACCTTACCATCACCATCTCATTCCCCATCTCCTTTTGAAAGTTCCATTTCAGCCATGGATAAAAAGGTTTTCCATTTCATTTATACATATGCTATAATTGTTGGTATCTGCCCCTTCACTCTTGATGAGTTTGTTCAAGCATTTCATGATAAGGACTCAATGTTACTTGGCAAGATTCATGTGGCCCTTCTCACACTTCTTCTATCTAACATTGAATTGGAGCTTACTAATGGGTTTTCACCTCATTTAAATAAATCATGTAACTTTCTTGCATTGCTTCACTCGGTTGAAAGTCAAGAGTATTCCCTGGACTTCTGGAGAAAATCTCTAAATTCTCTTACTTGGATTGAAATACTGCGTCAAGTGCTGGTTGCTTCTGGATTTGGTTCAAAACAAGGTTCCTTTCGTAGAGAGGTCCTTAGCAAGGAATTGAATCTTCTTGTAAACTATGGTCTATGCCCTGGCACCTTGAAGAGTGAGTTGTTTACAATCTTGTCAGAGAGAGGAAACATTGGATGCAAAGTACCTGAGTTGGCCAAGTCAATGCAGATTGTTGAATTAAACCTTGCCAGCACAACAAAGGAACTTGAGTCTTTAATATGTTCCACACTTTCAAGTGATATTACTTTATTTGAAAAGATTTCGTCAACTGCATACCGATTGCGTATGAGCACTGTTACGAAAGATGGTGATGAATCTCATTCAGATACGGAGGACTCTGGTAGTGTTGATGATGAACTTGATGACACTGATACATGTAGCAGTGGTGACGATTTTGAAAGTGGTTCAATAAACTCCAATATAAGAAAATTGAAGCGTGCAAACAGTCATAAAAATAATATGTTGAAAGTATACACTGAAATTGATGAGAGCCATCCAGGAGAAGCATGGTTATTAGGGCTGATGGAGAGTGAATATTCAGACTTAAACATCGAAGAAAAATTGAATGCATTGACAGCTTTAACTGATCTTGTTTCATCTGGATCCAGCATCAGGATGAAGGATTCTACAAAAGTTGCAGCTGACTGCAATTCTAGCATCCTATTACGAGGGTCTGGAGCTAAAATAAAGAGATCAGTAGTAAAGAAACCCGGGCCACTTTGGAACCAGAAAGTACACTTGAATTCTGATCCCTGTCCAGTAGATTCCTCATCGTTAATCTCAAGATTCCATAGTCACGAAGCTCCCTCTGAAACAGGAAAAGGTTCATCTAATTTGCACCCCATTCAATCAGTGTTTTTGGGATCTGATCGGCGGTACAATAGATACTGGCTTTTCTTGGGCCCTTGTAATGTAGATGATCCAGGCCACAGGAGAATATACTTTGAGTCTTCTGACGATGGTCACTGGGAGGTTATTGATACTGTGGAGGCGTTGTGTGCCTTGTTGTCAGTTTTGGATGATAGAGGAAAACGGGAGGCTCTTCTTATTGAATCTTTGGAAAGGAGACAAACATCACTATGCAGATCTATGTCCAGGATTAATGTCAATAGTACTGGAATGGGTTCTATGTCACATTCTGATCAATCTGAACTGGATATGGTCACAGATGAAAGTTATTCTCCTGCATCTGATGTTGACAACCTGAACCTGACTGAGACTGCTAAAGACTCTTTGCCGTCATCTGGGGCTGTGGTAATTGAAGCTGGAAAGAAAGGAGAGGAACAAATTAAAAAATGGATCCGTGTTCAAGAATATGATTCATGGATTTGGAATTTCTTTTATTCAGATCTTAATGTTGTAAAATATGGTAGAAGGTCTTATCTAGACTCTCTTGCCAAATGTAAGAGTTGTCATGATCTATACTGGAGAGATGAGAGACACTGTAAAATTTGTCATATGACATTTGAGCTTGATTTCGATCTAGAAGAAAGATATGCAATCCACATAGCCACCTGCAGGGAGAAAGAAGACAGCAATACATTTCCTAATCATAAAGTGCTATCATCAAAGATTCAATCACTGAAAGCTGCAGTTTATGCTATTGAGTCTGTTATGCCTGAAGATGCCCTGGTTGGTGCTTGGAGGAAGTCTGCTCATAAACTATGGGTGAAACGGCTCAGACGCACCTCAACTTTGGTGGAGCTTTTGCAGGTTCTTAATGATTTTGTTGGTGCCATCAATAAGGACTGGTTGTTTCAATGCAAATTTCCGGATGGTGTGGTTGAAAAAATAATTGCATCCTTTTCATCTATGCCTCATACATCATCTGCCCTTGCTCTGTGGTTAGTGAGGTTAGATGCTATAATTGCTCCCTACCTGGACAGAGTCCATCTTCAGAAGAATCAGGGAACCAGTAAGAGTTAA 3306 0.405 MEDYDSYIAQNDTCSREKFRAGGGKVLSRVAAAAAAARNGSSTSSFDMAVTRNVKKNQKRKGLQELFTTDYLVNNVLRKDGPALGREFDFLPSGPKYFTSACQEDQGSSKRKKVPSTILRKLFDVSYYIPLHLSQLLFPQVSNSAIRSLADCNKKAPVKKHGIGKGLMTVWRATNPDVGGLPFGFGVAGQEVPLISNFTGQKPVSENNGSRKTVNRAGMPKNKMQNKRNKLQDKRKPTMQRRVGELNVNVTQNQSPKEKCELALDSAISKEGVDRVSMLFDDEELELRELQERTNLFVCSDHLAASGMLGCSLCKALVCFLCVSPGDGFSHSSTLPSPSHSPSPFESSISAMDKKVFHFIYTYAIIVGICPFTLDEFVQAFHDKDSMLLGKIHVALLTLLLSNIELELTNGFSPHLNKSCNFLALLHSVESQEYSLDFWRKSLNSLTWIEILRQVLVASGFGSKQGSFRREVLSKELNLLVNYGLCPGTLKSELFTILSERGNIGCKVPELAKSMQIVELNLASTTKELESLICSTLSSDITLFEKISSTAYRLRMSTVTKDGDESHSDTEDSGSVDDELDDTDTCSSGDDFESGSINSNIRKLKRANSHKNNMLKVYTEIDESHPGEAWLLGLMESEYSDLNIEEKLNALTALTDLVSSGSSIRMKDSTKVAADCNSSILLRGSGAKIKRSVVKKPGPLWNQKVHLNSDPCPVDSSSLISRFHSHEAPSETGKGSSNLHPIQSVFLGSDRRYNRYWLFLGPCNVDDPGHRRIYFESSDDGHWEVIDTVEALCALLSVLDDRGKREALLIESLERRQTSLCRSMSRINVNSTGMGSMSHSDQSELDMVTDESYSPASDVDNLNLTETAKDSLPSSGAVVIEAGKKGEEQIKKWIRVQEYDSWIWNFFYSDLNVVKYGRRSYLDSLAKCKSCHDLYWRDERHCKICHMTFELDFDLEERYAIHIATCREKEDSNTFPNHKVLSSKIQSLKAAVYAIESVMPEDALVGAWRKSAHKLWVKRLRRTSTLVELLQVLNDFVGAINKDWLFQCKFPDGVVEKIIASFSSMPHTSSALALWLVRLDAIIAPYLDRVHLQKNQGTSKS 1101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2408 1101 Pfam DDT domain 356 402 IPR018501 -
Aed5g2408 1101 MobiDBLite consensus disorder prediction 559 591 - -
Aed5g2408 1101 MobiDBLite consensus disorder prediction 198 217 - -
Aed5g2408 1101 MobiDBLite consensus disorder prediction 571 588 - -
Aed5g2408 1101 PANTHER OS07G0619600 PROTEIN 23 1096 - -
Aed5g2408 1101 Coils Coil 273 293 - -
Aed5g2408 1101 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 626 665 IPR028942 -
Aed5g2408 1101 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 743 816 IPR028941 -
Aed5g2408 1101 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 23 1096 IPR044977 GO:0006357
Aed5g2408 1101 ProSiteProfiles DDT domain profile. 347 406 IPR018501 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2408 Aed-Chr5 25493631 25501979 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2408 356 1083 Homeobox Transcription Factor Family AT1G28420 25.864 3.17e-59 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Aed5g2408 WSD 1.9e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2408 - - gmx:100792062 1808.11