Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2400 ATGGGGATTTGCTTCAGCATTGAAGACCAAAACCGCCTCTCTGTCTCCGATTCGAACGCGAAGCATAAATCTGCAGGATCAGTAGGTCATGAATCGAGCGCTCCATTAACTTCCATGAACATCAAAGATCTCCGCGAAGGTGGTGGATACAGCAATGTGGATATTTTCACGTACGATGAGCTGAGGCTCGCGACGAAGCACTTTCGTCCCGATTTCATATTGGGAGAAGGAGGCTTCGGAGTTGTATATAAAGGCATCATAGACCATAGCGTGAGGTCGGGTTACAAGGCCACTGAAGTCGCCATTAAGGAACTTAATCGCGAAGGATTTCAAGGCGATAGGGAGTGGCTCATTGCTTTGCATGCTGCAAAGGGGCTCGCTTTTCTTCATGGTGCAGAGAGGCCTACTATATATCGTGACTTCAAGACTTCAAATATCTTGCTAGATGCGGATTTCAATGCGAAGCTATCAGACTTTGGCCTTGCAAAGGATGGCCCGATGGGGGACCAAACCCATGTTTCAACACGAGTAATGGGCACATATGGATATGCTGCTCCTGAGTATGTCATGACTGAACTGGCGAAGGCAATTATGTGGCTTAAGCATTCTCCTCTGTTGTTTTTTTATTCCAATTCTGAGTGA 642 0.4673 MGICFSIEDQNRLSVSDSNAKHKSAGSVGHESSAPLTSMNIKDLREGGGYSNVDIFTYDELRLATKHFRPDFILGEGGFGVVYKGIIDHSVRSGYKATEVAIKELNREGFQGDREWLIALHAAKGLAFLHGAERPTIYRDFKTSNILLDADFNAKLSDFGLAKDGPMGDQTHVSTRVMGTYGYAAPEYVMTELAKAIMWLKHSPLLFFYSNSE 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2400 213 Pfam Protein kinase domain 118 189 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed5g2400 213 ProSitePatterns Protein kinases ATP-binding region signature. 74 103 IPR017441 GO:0005524
Aed5g2400 213 PANTHER OS01G0588500 PROTEIN-RELATED 17 117 - -
Aed5g2400 213 Gene3D Transferase(Phosphotransferase) domain 1 116 197 - -
Aed5g2400 213 Gene3D Phosphorylase Kinase; domain 1 34 115 - -
Aed5g2400 213 ProSiteProfiles Protein kinase domain profile. 1 213 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed5g2400 213 SUPERFAMILY Protein kinase-like (PK-like) 53 192 IPR011009 -
Aed5g2400 213 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL17-RELATED 118 191 - -
Aed5g2400 213 PANTHER OS01G0588500 PROTEIN-RELATED 118 191 - -
Aed5g2400 213 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL17-RELATED 17 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2400 Aed-Chr5 25424528 25431190 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2400 4 191 Glycoside Hydrolase AT3G07070 35.573 1.53e-34 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Aed5g2400 Pkinase 2.3e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2400 - - egt:105970136 227.254