Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2382 ATGGGTGTTCCAGAACCTCCACCAGTACCACCCTCTCAACATCTCTATCCACAAGAACTTCAGCTTAAACTTTACCAAGCCTTCATATTCTCAATTCCCATACTCTTTTCCATTATTTTGGTTCTTTTGTTTTACTTGTTCTACCTCAAAAGGAGGGCTTCTTCACTCTCATCACCACCTCTCCACATACTTCCCAATACTGCTGCTAATCCACAAACTACATATCCTTATCCTTCACAACCTTTCCGTTTAGATCTGACAGTGCAATATCTCGACAAACTTCCAAGAATTTTGTTTGATGAGGATTTAAGAACAAGAGATTCAGTATGTTGTGTTTGCCTAGGAGAATTTGAGGTGAAGGAAGAGTTGCTACAGATACCTTATTGCAAGCATGTGTTTCATATAAGCTGCATATGCAACTGGCTGCAATCAAACTCCACGTGTCCACTTTGTAGATGCTCCATCATTCCCTCAACCAAGTTCCTTGATCCAGCACCACCTGTTATATCAGACCCACCACAGCAAGTTGGTATTTCAGGCTCTTCATCATCACATTCACACATCATGTCATTGCCTCATCAACAAGAAGAAGAAGAAGAAGAAGAAGAAGTTGGTGCTTCCACAAATAATGCCATTTTTCAAGGGAATGATGTAGTATAA 660 0.4045 MGVPEPPPVPPSQHLYPQELQLKLYQAFIFSIPILFSIILVLLFYLFYLKRRASSLSSPPLHILPNTAANPQTTYPYPSQPFRLDLTVQYLDKLPRILFDEDLRTRDSVCCVCLGEFEVKEELLQIPYCKHVFHISCICNWLQSNSTCPLCRCSIIPSTKFLDPAPPVISDPPQQVGISGSSSSHSHIMSLPHQQEEEEEEEEVGASTNNAIFQGNDVV 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2382 219 SUPERFAMILY RING/U-box 89 161 - -
Aed5g2382 219 MobiDBLite consensus disorder prediction 174 190 - -
Aed5g2382 219 Pfam Ring finger domain 110 152 IPR001841 -
Aed5g2382 219 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 82 157 IPR013083 -
Aed5g2382 219 MobiDBLite consensus disorder prediction 172 219 - -
Aed5g2382 219 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHA4A-RELATED 13 168 - -
Aed5g2382 219 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 13 168 - -
Aed5g2382 219 ProSiteProfiles Zinc finger RING-type profile. 110 152 IPR001841 -
Aed5g2382 219 SMART ring_2 110 151 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2382 Aed-Chr5 25284778 25287348 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2382 4 208 C3H Transcription Factor Family AT4G10150 34.404 6.75e-32 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2382 K19039 - gmx:100806554 328.561