Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2375 ATGGACCCGGATTTCGCGACGAATGATATGCTCACACTCACGCACGAAGCTTTTGATGCCAACGACAATGATGATGCAGCTGTTGAAGGGGAAAGATGTGGAATATGCATGGATATGGTTATTGACAGGGGACTTCTGGATTGCTGTCAGCACTGGTTCTGCTTTGTATGCATTGACAACTGGGCTACCATCACTAATCTTTGCCCACTTTGCCAGAATGAGTTTCAAGATGATGACTGGTCCATTGAAGAGAAGAATAACACACTGTCATTTCCTTCTTACTACATTGATGAAAATGCAGTTATTTGCTTGGATGGTGATGGCTGCAAGGTTCGCAATGATTTGGCGACTATTGAAGGAGGTTCTGATCTCGATACATCAATAGCCTGTGATTCGTGTGACATATGGTATCATGCCTTCTGTGTGGGATTTGATACTGAAGTTACATCAGACAGTGCATGGTTATGCCCCAGATGTGTTGTTGATGAAGTTTCTAAAGGAACATCCAATTCAGTAGAGAGGACAACCATGGAGTGTAATGCAGATAATCATAATAGTAACAGTGAATGCCATGCTAAGGATTCCTTTTCAGGAAAAGTGTCTGTGTCTGTTGCTGATGCAGGAGAGACGGCTGTTGTTGTTTCGATGGTTGACATAACAAAATTGGATCCAGCAACAAGTGAGAAAAGCCTATTGCCTTTTGAAGTTGGTGGGGACCCAATGACTGAATCATGTATTTTAATGTCTGACACAAATGATCAGCAAAGTGGGGAATTGAAGACAAATACATTACCAATCATGGAGGAAGAAGAACTGGAACTGTCTTTGTCGAACAATATATCCTGTAACATAACTTCTAAATCCTTAGTGCATAATGATTTAAAGAAAAGTGTCAGTGGAGCAAAGAATGAACCAAGTGGCTTTGACGGAACCAAGTTATTTGATGAGTCCCATACCAAAACTAGTCCATCCAGAATTGAATCCGAAATGGGTCTTCATCTTGGTTTGTCAGTGGGCTCTTTCTTATCTGACAAGAATGAAACAAAAGATCAAGCAACTGATGTCCTGTGCTTGAGTTCAGAAGAATGTTTTTTGAAAGGAGGTGAAATTGAAGCTAATGCTTGTAAGGACAATGCCAGAGTGGCTGGTGGAAAGAGAAAACATGTTGATTATAGTAATGAGCAAGTTCATATAAATGCTGATGATGGAGATGTCAAGCCTGAACTTCCGGATGAAGCTGCACAAAAGAAAGTTAGAGCTACTGGTAGTCAAATGAGTAGTACTAATGACTCAGCAGATACTCATCTTTTAGAAAATGCTCAGAAACACCCTGCTTTAAAACATTCTCCAACAAAGGCAATTGTCAAATCAGATATAATGAATATAGTTAAAGGGACAAACCAGAGGCATTCCAAGGGACATACTGACACTAATGCTTGTGACAACTTATCTGAAAACAAAGGAAATATGGCTGGGTTGAGGGTTAAAAAGATCATGAAGAGAGTCTCTGATGATGGAGAATCATCCTTGGTAGTTCAAAATCTAAGGAAGGAAATTAGAGAAGCTGTTCGTAACAAATCCTCTATAAAATTTGAGGATAACCATTTTGATCCTAAGCTTCTTGAAGCATTTAGGGCTGCTATAACAGGGCCTAAAACTGACCTTGTAAACAAGTTATCCCCTGCAGCTATAAAGGCAAAGAAGTCAATGTTGCAGAAAGGAAAAGTGCGTGAAAATCTAACAAAGAAAATTTTTGGGACTTCCAATGGAAGAAGAAAGCGTGCATGGGATAGGGACTGTGAAATTGAGTTTTGGAAATATCGTTGCACGAGAGTTACAAAGCCTGAAAAGATTGAAACTTTAAAATCAGTTCTTGATCTACTAAGAAAAGGTTCAGACAGTCCAGTATCAAAGCAAGCTTCTGAATGTCAGGCCAAGAGTCCCATTCTTTCCAGGTTGTATTTAGCAGATACATCTGTTTTCCCCCGGAAAGAGGGTGTCAAACCTCTCTCTGTGCTTAAAACCATTGCTAACTCGGAGCAAACGAAACAAAACAATCCATCAGAAAAAGTACCAAATCTCTATGTTGATAACAATACTATTAAAGCAACAGATTTAAATATTTTTTTATCAAAGAGCGGCATTTGCTCATCTGGAAAAAAAGTAGATAAGAAGATTGTACATGGTCCAGTTGGTGATAATTCAACTTCATCAACTGGTGCCAAAGCTAGCACAAAAGAGTTAGGCCTTAAATCTGGTTGTATGAAGAGTGATAAAAGAAAATGGGCCTTGGAGGTTCTTGCAAGGAAAACAGCTGCCACAAGCGGGACCACAGCAAATGGAAATCAGGAAGAGAATGCAGTTTTTAAAGGAAATTATCCTTTGCTTGCCCAATTGCCAATTGATATGAGACCAGTATTGGCACCTTGTCTCCACAATAAAATTCCTATATCAGTCAGACAGACACAGCTTTACCACCTGACAGAGCGCTTATTGAGGAACACAAATCTGGCTGTGATTCGCAGAACTGCAGATACAGAATTAGCGGTTGCAGATGCAATTAATATTGAAAAAGAGGTTGCTGACAGATCAAACAGCAAGCTTGTGTATTTGAACCTTTGTTCACAAGAGCTCTTGCATCGCACAAATAACACAAAAACCAATGTAGCCACAGATACAAGTCCACCAGCCTCATCAGCAATGCTTACTGATCAACAATCGGAACTTAATACTGATGATCTTTCAACTGACCCTGAAGTTGAAACAGCCTTGAAAAATGCTGGTCTGTTGTCTGATTCCCCACCTAGCAGTCCACATGAGAACAGAGAAACATGTAATGATGATATGTCGGGGCCTGATAATATACTTGAATTGGATTCTCATCCTGATCTGGATATTTATGGTGATTTTGAGTATGATTTGGAAGATGAAGATTATATTGGTGCTAGTATTACAAAGGTCTCAAATCCAAAACAAGAGCAAAATGAGTCAAAAGTGAAACTTGTTTTCTCCACCATGAACTTGAAAAAGTCAGATATCGCCTTAGATTGTGCAGACTGTGAGGGGTCTGAAAGAAATGAAGTGCCAGGAGATGCATCCTGCTCACCAAATTGTCACAATGATGCAGTCCATAGGGACAGGGCTTCTTCTACAATTGATACGGAGATGGACCAACCTTCTGTTTCATCTGAGCTTCTACCCTGTGAGGGTGCTGTTGAGCCACCGGACTCAGAATTTGAAGAATTATATGGCCCGGACAAAGAACCACTTATAAAAAAATTTCCAGTCAGTGAATCAAGATCATTACATGGAGATGGCAAGACAGAAACTCTAAGCGTGGCCAATGACGAAAAACATGTCTTGGAGAATGCAGTAAATGCTTTGGAACTTGGGAATGAGAATCTCGCAGAAAAAGTTTCTGAGGCTGGTGAAAATTTCCAAAGGAAGGAAGAGAAATCTGATGTCACTGCTAAGCAGACTTACTCTGTAAATCATGTAACTAAAAAGGTAGAAGCTTATATCAAGGAGCACATCAGACCACTGTGCAAGAGTGGTGTAATCACGGCTGACCAATACAGGTGGGCTGTTGCAAAAACGACTGAGAAGGTTATGAAGTATCATTCCAAAGCAAAGAATGCTAGTTTTCTCATAAAGGAAGGAGAGAAAGTAAAAAAACTTGCAGAGCAGTATGTTGAATCAGCCCGACAGGACAGAAAAAATTGA 3723 0.3997 MDPDFATNDMLTLTHEAFDANDNDDAAVEGERCGICMDMVIDRGLLDCCQHWFCFVCIDNWATITNLCPLCQNEFQDDDWSIEEKNNTLSFPSYYIDENAVICLDGDGCKVRNDLATIEGGSDLDTSIACDSCDIWYHAFCVGFDTEVTSDSAWLCPRCVVDEVSKGTSNSVERTTMECNADNHNSNSECHAKDSFSGKVSVSVADAGETAVVVSMVDITKLDPATSEKSLLPFEVGGDPMTESCILMSDTNDQQSGELKTNTLPIMEEEELELSLSNNISCNITSKSLVHNDLKKSVSGAKNEPSGFDGTKLFDESHTKTSPSRIESEMGLHLGLSVGSFLSDKNETKDQATDVLCLSSEECFLKGGEIEANACKDNARVAGGKRKHVDYSNEQVHINADDGDVKPELPDEAAQKKVRATGSQMSSTNDSADTHLLENAQKHPALKHSPTKAIVKSDIMNIVKGTNQRHSKGHTDTNACDNLSENKGNMAGLRVKKIMKRVSDDGESSLVVQNLRKEIREAVRNKSSIKFEDNHFDPKLLEAFRAAITGPKTDLVNKLSPAAIKAKKSMLQKGKVRENLTKKIFGTSNGRRKRAWDRDCEIEFWKYRCTRVTKPEKIETLKSVLDLLRKGSDSPVSKQASECQAKSPILSRLYLADTSVFPRKEGVKPLSVLKTIANSEQTKQNNPSEKVPNLYVDNNTIKATDLNIFLSKSGICSSGKKVDKKIVHGPVGDNSTSSTGAKASTKELGLKSGCMKSDKRKWALEVLARKTAATSGTTANGNQEENAVFKGNYPLLAQLPIDMRPVLAPCLHNKIPISVRQTQLYHLTERLLRNTNLAVIRRTADTELAVADAINIEKEVADRSNSKLVYLNLCSQELLHRTNNTKTNVATDTSPPASSAMLTDQQSELNTDDLSTDPEVETALKNAGLLSDSPPSSPHENRETCNDDMSGPDNILELDSHPDLDIYGDFEYDLEDEDYIGASITKVSNPKQEQNESKVKLVFSTMNLKKSDIALDCADCEGSERNEVPGDASCSPNCHNDAVHRDRASSTIDTEMDQPSVSSELLPCEGAVEPPDSEFEELYGPDKEPLIKKFPVSESRSLHGDGKTETLSVANDEKHVLENAVNALELGNENLAEKVSEAGENFQRKEEKSDVTAKQTYSVNHVTKKVEAYIKEHIRPLCKSGVITADQYRWAVAKTTEKVMKYHSKAKNASFLIKEGEKVKKLAEQYVESARQDRKN 1240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2375 1240 PANTHER RING FINGER PROTEIN 41, 151 80 1236 - -
Aed5g2375 1240 Pfam Zinc finger, C3HC4 type (RING finger) 33 71 IPR018957 GO:0046872
Aed5g2375 1240 Coils Coil 512 532 - -
Aed5g2375 1240 ProSiteProfiles Zinc finger RING-type profile. 33 72 IPR001841 -
Aed5g2375 1240 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 91 IPR013083 -
Aed5g2375 1240 SMART PHD_3 108 160 IPR001965 -
Aed5g2375 1240 MobiDBLite consensus disorder prediction 298 326 - -
Aed5g2375 1240 ProSiteProfiles Zinc finger PHD-type profile. 65 162 IPR019787 -
Aed5g2375 1240 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 99 165 IPR013083 -
Aed5g2375 1240 ProSitePatterns Zinc finger RING-type signature. 49 58 IPR017907 -
Aed5g2375 1240 PANTHER RING/U-BOX PROTEIN 80 1236 - -
Aed5g2375 1240 SUPERFAMILY RING/U-box 32 77 - -
Aed5g2375 1240 MobiDBLite consensus disorder prediction 395 430 - -
Aed5g2375 1240 Pfam PHD-finger 125 160 IPR019787 -
Aed5g2375 1240 MobiDBLite consensus disorder prediction 1024 1085 - -
Aed5g2375 1240 MobiDBLite consensus disorder prediction 886 917 - -
Aed5g2375 1240 MobiDBLite consensus disorder prediction 395 415 - -
Aed5g2375 1240 MobiDBLite consensus disorder prediction 309 323 - -
Aed5g2375 1240 SMART ring_2 33 71 IPR001841 -
Aed5g2375 1240 SMART ring_2 100 159 IPR001841 -
Aed5g2375 1240 SUPERFAMILY FYVE/PHD zinc finger 123 162 IPR011011 -
Aed5g2375 1240 Coils Coil 1118 1152 - -
Aed5g2375 1240 MobiDBLite consensus disorder prediction 886 947 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2375 Aed-Chr5 25225226 25238603 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2375 27 82 C3H Transcription Factor Family AT2G39100 33.898 8.39e-07 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Aed5g2375 PHD 2.1e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2375 - - gmx:100808102 2144.39