Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2363 ATGGCTCCCTCAGCCATATTATGTGCCTTTTGCATCATCTTCCTTTTCCATCTCCAAAGCACAAGAGGAAATAACTGCAACACCTTGAGATGCGGCGACACAGATATTCATTTCCCTTTCGGTTTAAGAGGATCCAACGAAGATCGTCGCTGCAGGTACTACCCAATCCCAAGCTTCCAACTTTCGTGTCTTCAAGAAACACAAACCATCCTCACCCTCCCAGGTTTCGGGAACTTAACCGTGAAAAGCATCGATTACGAACTCCAAAGCATCAAAGTCAACGACCCCGATGGGTGTCTCCCGAAACGGTTCTTACAAAAGTGGAGCCTTTCGGATTCACCTTTTGTTTTAAACCCCGTTATTTATGGACCCATTCCCTTTAACCTCACTTTCCTGCGTTGCCCCTCCAACGTGACCACGGACTCGTCTTCTCGATTCCCGTTGGCGCCAATTTCGTGCCTCAGCGACAACAAAAAAAAACTACTCCCTTCGTGGGCACAACCTATTATGTCGTCTCAACCCTGCCAAGTCATGTCTCGGGCTCTTGTCCCTCTCCCTCTCCCAGTGTCGGACATGCCCTTCTGGCCCGATCTCAACACGTACACCGCCGACCTTGATTTGGTGTGGACCGAACCCATTTGTAAGGACTGTGCACTTAGTGGTCAAGTTTGTGGCTTCTCCAACGACAAAACCAGAACCCAACCTCAAGTTCGGTGTTTCGCTACGGACTCCAGCAAAGGTCTTACAAGAAGTGCGAAATATGGATTAGCAATAGGAGTGGGAATACCAGGACTCTTGTGTCTAATTGGGATTTCATGCTTTATCTGCGGTAAGGTTAGGATGCTAACCCATCGTGGCACGGATCTTCCGGTGAGAATATCATTGGAACTAGAACCCATCCCTTTCGTAATGGGACTCGACGGTGCCACCATTGACAAGTATCCCAAAACTCTTATTGGGGAAAGTGGTCGCTTATTGAAGCCCAATGACAGTACCTGCGCAATTTGCCTCTCTGAATATCAACCCAAAGAGACCCTCAGGACCATACCCGAATGTAACCATTATTATCACGCTGATTGCATTGATGAGTGGCTCAAATTGAATGCCACGTGTCCCTTGTGCAGGAATTCTCCTGAAGCATCTTCCACGGCTTCTTTTTCTTCCTTTTCTCCCACTTCTTCATTGTCCTCTCGCTCTCCACAATAG 1206 0.4801 MAPSAILCAFCIIFLFHLQSTRGNNCNTLRCGDTDIHFPFGLRGSNEDRRCRYYPIPSFQLSCLQETQTILTLPGFGNLTVKSIDYELQSIKVNDPDGCLPKRFLQKWSLSDSPFVLNPVIYGPIPFNLTFLRCPSNVTTDSSSRFPLAPISCLSDNKKKLLPSWAQPIMSSQPCQVMSRALVPLPLPVSDMPFWPDLNTYTADLDLVWTEPICKDCALSGQVCGFSNDKTRTQPQVRCFATDSSKGLTRSAKYGLAIGVGIPGLLCLIGISCFICGKVRMLTHRGTDLPVRISLELEPIPFVMGLDGATIDKYPKTLIGESGRLLKPNDSTCAICLSEYQPKETLRTIPECNHYYHADCIDEWLKLNATCPLCRNSPEASSTASFSSFSPTSSLSSRSPQ 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2363 401 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 400 - -
Aed5g2363 401 Pfam Wall-associated receptor kinase galacturonan-binding 26 95 IPR025287 GO:0030247
Aed5g2363 401 MobiDBLite consensus disorder prediction 378 401 - -
Aed5g2363 401 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 304 380 IPR013083 -
Aed5g2363 401 ProSiteProfiles Zinc finger RING-type profile. 333 375 IPR001841 -
Aed5g2363 401 Pfam Ring finger domain 332 375 IPR001841 -
Aed5g2363 401 SMART ring_2 333 374 IPR001841 -
Aed5g2363 401 CDD RING-H2_PA-TM-RING 332 375 - -
Aed5g2363 401 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 400 - -
Aed5g2363 401 SUPERFAMILY RING/U-box 325 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2363 Aed-Chr5 25184388 25186451 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2363 19 384 C3H Transcription Factor Family AT2G46495 34.225 6.91e-50 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2363 - - gmx:100810240 600.512