Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2353 ATGGAGAGTGACTTGAGCTGGGAGCAGAACACACTCGTCAATGAGCTCATTCAGGGGATGGAGGTAGCAAGGAAGTTGAAGGCAGATTTGAGGATTCCGTATTCAGTTGACACAAGAGATTTGCTTGTGCAGAGGATATTATCTTCTTATGAAAAGGCTCTGCTCATTCTAAGATGCAATTCTTCATCAACTTCCGACTTGCAGTCCATGAGTCAAGCAACACCAACTTTGCTACCCGAGTCCCCAATATCTGTCCATGAAAGTCCTCTGTGCGAGGACGTTGAAGTTAAACATGATTCAAAGAAAAGAAAGATAACGCCCAAATGGACGGATCATGTAAGAGTGAGCTGTGATAGTGGTCTTGAAGGACCACATGAAGATGGCTACAACTGGAGAAAATATGGTCAGAAAGACATCCTTGGAGCCAAATATCCCAGAAGTTACTATAGGTGCACCTACCGCAACACTCAGGGCTGTTGGGCCACAAAGCAAGTGCAGAGATCAGATGAAGATCCCACAATATTTGACATAACTTACAGAGGAAAGCACACCTGTTCTCAGGGAAACAATGCAGTTCTGCCACCCAAGTCACCAGACAAACAAGAGAAACCAACACACTGTCATAACATGGATATTCACCATGCACCGGCAGCACAAGAAAGCCTTACAAAGTTCAGAAACATCTTGTCTGTCAACACAGACAATCTGGACAATGGAGATATGGCATCATACCCTTTCACTTTCCCTTCAACTTCATTTGGATGCATGAAACAAGACAACCACAGCTTGATTCCTTTGGCTCTAGAGAACGAGTCCCTCTTGAGCGACCTGTACCAAACACACCTCTTATCTCCAACAACACCAGAATCAAACTATTTCCCGTATCCAACTTTCCAGATGAATAGGTTTGATGGGATCTACAAATCCGATATCAATGAGATCATTTCCACCAACACATCTGCAACCAATTCTCCAATTCCCGATTTCAACTTCTCACTTGATCCAGTGGAGATTGACCCAAATTTCCCTTTCAATACCCCAGGATTTTTCTCCTAA 1056 0.4366 MESDLSWEQNTLVNELIQGMEVARKLKADLRIPYSVDTRDLLVQRILSSYEKALLILRCNSSSTSDLQSMSQATPTLLPESPISVHESPLCEDVEVKHDSKKRKITPKWTDHVRVSCDSGLEGPHEDGYNWRKYGQKDILGAKYPRSYYRCTYRNTQGCWATKQVQRSDEDPTIFDITYRGKHTCSQGNNAVLPPKSPDKQEKPTHCHNMDIHHAPAAQESLTKFRNILSVNTDNLDNGDMASYPFTFPSTSFGCMKQDNHSLIPLALENESLLSDLYQTHLLSPTTPESNYFPYPTFQMNRFDGIYKSDINEIISTNTSATNSPIPDFNFSLDPVEIDPNFPFNTPGFFS 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2353 351 Pfam WRKY DNA -binding domain 126 185 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aed5g2353 351 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 1 347 IPR044810 GO:0003700
Aed5g2353 351 SUPERFAMILY WRKY DNA-binding domain 124 187 IPR036576 GO:0003700|GO:0006355|GO:0043565
Aed5g2353 351 ProSiteProfiles WRKY domain profile. 120 183 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aed5g2353 351 Gene3D WRKY domain 111 188 IPR036576 GO:0003700|GO:0006355|GO:0043565
Aed5g2353 351 SMART WRKY_cls 125 187 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aed5g2353 351 PANTHER WRKY TRANSCRIPTION FACTOR 41-RELATED 1 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2353 Aed-Chr5 25128397 25131201 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2353 5 256 WRKY Transcription Factor Family AT4G23810 44.599 1.68e-67 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Aed5g2353 WRKY 7.6e-27 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2353 - - gmx:100815760 650.203