Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2350 ATGGGTGACACAGTTGTTGCTGAAGTACCCACAAAGAGGGGAAGGGGCAGAAGGGCCCTGAAGGAGAAGACTGAAACCCCATCAACGAACGATGCCAACATCATTTTGCCATCTTCTGATGAGGCACAAGTTGTTGTTCCCTCAAAGAAACAACAAGATTGCAAGAAGAAGCAGCAATCTTTCGAGAAAGAATTGGTGCAGATGCAGGAAATGCTGCAGAAGATGCGCCTCGAGAAGGATAAGACCGACGAGCTCTTGAAGGCCAAGGACGCTGCTCTTAAGCAGAAAGACGAAGAGCTCGAAAACCACGGCCGTGAGCAAGAGAAGCTTCAAACCGAGCTCAAAAAATTGCACAAGTTGAAGGAGTTTAAACCTACCATGAATTTGCCTGTGTCATTGAAAGACAATGAATTAAAGAAGGATAAGAAGAAGAAGGGGTGCTCCGAGACCAAAAGGCCTTCTCCAGCTTACATTTTGTGGATGAAAGACCAATGGACTGAGATCAAGAAAGCAAACCCAGAAGCAGAGTTTAAGGAAATTTCTAACATGCTGGGGTCTAAATGGAAGACTGTTAGTGCAGAAGAGAAGAAGCCTTACGAGGAGAAATACCATGCTGAGAAAGAAGCTTATTTGCAAGTGATTGCAAAGGAAAAACGAGAGACTGAAGCAATGAGGTTGTTGGAAGACGAGCAGAAGCAGAGAACTGCCATGGAATTGCTTGAACAGTACATGCAATTCAAACAAGAGGCAGAGAAAGAGGGCAAGAAGAACAAGAAAGAGAAGGATCCATTGAAGCCAAAGCACCCTATGTCAGCTTATTTCTTGTTCACTAATGATAGGCGAGCAGCTCTTGTTGCTGAGAACAAGAATTTCTTGGAGGTTCCAAAAATCACAGCTGAAGAGTGGAAAAGCATGACAGAAGAACAAAAGAGGCCCTATGAAGAGATGGCAAAGAAGAACAAAGAGAAATATGCCATAGAAATGGAGGCTTATAAACAGAAGAAAGATGAGGAGGCTGCCAATCTCATGAAAGAAGAAGAGGAGCATATGAAACTTCAGAAACAGGAAGCCTTGCAATTGCTGAAGAAGAAGGAGAAAACTGATAATATAATCAAGAAAACAAAACAGGATCGTCAAAAGAAGAAACAAAACAAGGAAGATAAGAATTCTGATCCAAACAAGCCCAAGAGGCCTCCATCCTCATTCCTCATATTCAGCAAAGAAGCTAGGAAAACTTTACAGGAGGAGCGACCAGGAATCAACACCTCCACCCTTAGTGCACTTATTTCATTGAAGTGGAAGGAATTGAGCGAGGAAGATAGACAAATCTGGAATGGCCAAGCATCTAAAGCAATGGATGCATACAAGAAGGAATTGGAGGAATACACCAAATCCCTTGTTGCAATTGCAAGCCAAGACCGGAAAGCCGAGTAA 1434 0.431 MGDTVVAEVPTKRGRGRRALKEKTETPSTNDANIILPSSDEAQVVVPSKKQQDCKKKQQSFEKELVQMQEMLQKMRLEKDKTDELLKAKDAALKQKDEELENHGREQEKLQTELKKLHKLKEFKPTMNLPVSLKDNELKKDKKKKGCSETKRPSPAYILWMKDQWTEIKKANPEAEFKEISNMLGSKWKTVSAEEKKPYEEKYHAEKEAYLQVIAKEKRETEAMRLLEDEQKQRTAMELLEQYMQFKQEAEKEGKKNKKEKDPLKPKHPMSAYFLFTNDRRAALVAENKNFLEVPKITAEEWKSMTEEQKRPYEEMAKKNKEKYAIEMEAYKQKKDEEAANLMKEEEEHMKLQKQEALQLLKKKEKTDNIIKKTKQDRQKKKQNKEDKNSDPNKPKRPPSSFLIFSKEARKTLQEERPGINTSTLSALISLKWKELSEEDRQIWNGQASKAMDAYKKELEEYTKSLVAIASQDRKAE 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2350 477 MobiDBLite consensus disorder prediction 10 25 - -
Aed5g2350 477 MobiDBLite consensus disorder prediction 246 267 - -
Aed5g2350 477 Coils Coil 314 364 - -
Aed5g2350 477 SUPERFAMILY HMG-box 139 213 IPR036910 -
Aed5g2350 477 CDD HMGB-UBF_HMG-box 266 329 - -
Aed5g2350 477 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 266 332 IPR009071 -
Aed5g2350 477 Pfam HMG (high mobility group) box 150 212 IPR009071 -
Aed5g2350 477 Pfam HMG (high mobility group) box 266 332 IPR009071 -
Aed5g2350 477 Pfam HMG (high mobility group) box 395 462 IPR009071 -
Aed5g2350 477 CDD HMGB-UBF_HMG-box 395 460 - -
Aed5g2350 477 MobiDBLite consensus disorder prediction 134 150 - -
Aed5g2350 477 Coils Coil 58 120 - -
Aed5g2350 477 MobiDBLite consensus disorder prediction 246 268 - -
Aed5g2350 477 SUPERFAMILY HMG-box 390 466 IPR036910 -
Aed5g2350 477 SMART hmgende2 265 333 IPR009071 -
Aed5g2350 477 SMART hmgende2 394 464 IPR009071 -
Aed5g2350 477 SMART hmgende2 149 219 IPR009071 -
Aed5g2350 477 MobiDBLite consensus disorder prediction 131 151 - -
Aed5g2350 477 Coils Coil 371 391 - -
Aed5g2350 477 MobiDBLite consensus disorder prediction 339 418 - -
Aed5g2350 477 Coils Coil 445 472 - -
Aed5g2350 477 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 395 463 IPR009071 -
Aed5g2350 477 SUPERFAMILY HMG-box 253 338 IPR036910 -
Aed5g2350 477 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 7 469 IPR044601 GO:0003677
Aed5g2350 477 Gene3D High mobility group box domain 249 344 IPR036910 -
Aed5g2350 477 Gene3D High mobility group box domain 375 475 IPR036910 -
Aed5g2350 477 CDD HMGB-UBF_HMG-box 151 215 - -
Aed5g2350 477 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 150 218 IPR009071 -
Aed5g2350 477 MobiDBLite consensus disorder prediction 1 34 - -
Aed5g2350 477 MobiDBLite consensus disorder prediction 339 394 - -
Aed5g2350 477 Gene3D High mobility group box domain 136 216 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2350 Aed-Chr5 25102014 25109505 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Aed5g2350 HMG_box 3.1e-16 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2350 K09273 - gmx:100783033 667.922