Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2342 ATGGCTTCATCTTCCATCATTAAACACACTCACCACCTTAACCGCACCAAACTCTTCATGGAAGAAGAACAAACCCTTTTGAAGAAGAACCGTCACTACCCCAAACTCATTCGAATACGTGTCGCCGACGCCGACGCCACGGACTCCTCCAGCGATGAGGACCAGCCCTCCGTCTCCTCCACGCGCCACCGTCGAGTCAAAAACTTCGTCAACGAGATTACCATACAAGGCGCCGCCGCCGTTAAAGTTGTTTCTAAGAAAAGAAGGTTCAAGTCCCGTGCCGGAGCTCCATCGTGTCTGCGGCGGACGGGGGCGAAGAAGTTCCGTGGAGTGAGGCAGCGGCCGTGGGGGAAGTGGGCGGCGGAGATAAGGGACCCGTCTCGCCGCGTCCGCCTCTGGTTGGGAACCTACGACACCGCCGAGGAAGCCGCCATTGTCTACGACAACGCGGCCATTCAGCTGCGTGGCGCCGACGCGCTCACCAATTTCATAACGCCGCCGCCGGAGAACAGAAAAGCTGGTTACTGTTCCGGCGAAGAGTCACGGAACAACGACTTGCGTTCTCCCACTTCGGTTCTTGGGTGCTGTTCGGTGTCCGAGGAAGCTGAGTCCATAACCGTAACCGCAAACGCAAACGACATCGTTGGCCCCTCAAGTGAGTGCTTCGAATATTCATGCGTTTCGGAGGATAATAATAATAATAAGTTGAAAGCGGAATCAGTGTTTGGTGTTCCTAACGAAGTGGCATTTGATTTTGAAAGTACGTTAGCTATGTTTGACGACGAGGGCGTTAACAATGTGGCAGATAGAAGTATATTCTTCGCAGATGATTTTGATTTCGATTTCACTGGAAGCTTTGTTAGTGAGAATTTTGATTTTGGTTTCGGGTTTACAAGTTGGCATAGAGAGTGTGATAATTTCCAAGACATTGGGGATTTGTTTGTTTGGGATCCCCTTGTCGCTCTTTGA 969 0.5139 MASSSIIKHTHHLNRTKLFMEEEQTLLKKNRHYPKLIRIRVADADATDSSSDEDQPSVSSTRHRRVKNFVNEITIQGAAAVKVVSKKRRFKSRAGAPSCLRRTGAKKFRGVRQRPWGKWAAEIRDPSRRVRLWLGTYDTAEEAAIVYDNAAIQLRGADALTNFITPPPENRKAGYCSGEESRNNDLRSPTSVLGCCSVSEEAESITVTANANDIVGPSSECFEYSCVSEDNNNNKLKAESVFGVPNEVAFDFESTLAMFDDEGVNNVADRSIFFADDFDFDFTGSFVSENFDFGFGFTSWHRECDNFQDIGDLFVWDPLVAL 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2342 322 CDD AP2 106 163 IPR001471 GO:0003700|GO:0006355
Aed5g2342 322 Gene3D AP2/ERF domain 106 165 IPR036955 GO:0003700|GO:0006355
Aed5g2342 322 SMART rav1_2 107 170 IPR001471 GO:0003700|GO:0006355
Aed5g2342 322 PRINTS Ethylene responsive element binding protein signature 108 119 IPR001471 GO:0003700|GO:0006355
Aed5g2342 322 PRINTS Ethylene responsive element binding protein signature 130 146 IPR001471 GO:0003700|GO:0006355
Aed5g2342 322 Pfam AP2 domain 107 156 IPR001471 GO:0003700|GO:0006355
Aed5g2342 322 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 6 318 - -
Aed5g2342 322 ProSiteProfiles AP2/ERF domain profile. 107 164 IPR001471 GO:0003700|GO:0006355
Aed5g2342 322 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF2 6 318 - -
Aed5g2342 322 SUPERFAMILY DNA-binding domain 107 163 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2342 Aed-Chr5 25060011 25060979 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2342 7 322 AP2-EREBP Transcription Factor Family AT4G23750 40.669 1.38e-53 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aed5g2342 AP2 2.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2342 - - gmx:100813992 484.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1763 11 21091813 21092625 Aed5g2342 5 25060011 25060979 PCT