Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2312 ATGGGTCACCATTCTTGCTGCAACCAACAGAAGGTTAAAAGAGGACTTTGGTCTCCCGAGGAAGATGAAAAACTCATTAGATACATTACCACTCATGGATATGGCTGTTGGAGTGAAGTTCCTGAAAAGGCTGGGCTTCAAAGGTGTGGCAAGAGTTGTCGCTTGAGATGGATTAATTATTTAAGACCCGATATTAGAAGAGGCAGGTTTACACCTGAGGAGGAGAAGTTAATTATAAGCCTTCACGGGGTCGTAGGCAACAGATGGGCTCATATTGCAAGCCACTTGCCAGGTCGAACTGACAATGAAATAAAGAACTATTGGAACTCATGGATAAAAAAGAAAATAAGAAAGACTTCGATGTCTTCAACCACCATTGCACAAAGCATCGATCGCAATTCTTCCCAATTCAATTACAATTCCAATCTACTAGACCACTTTCAGTTTCCCAACCAAGACAACAACAACAATCTACAAACAAAACCACCACCAATTCAAGAAACCTTGTTTTCCTCAACATGCCCTCTGTTCATGTTTGACACTACTACTAGTTCACTAGAAGGCACAGCAACAGATAACTGCAACAGTACTACTGTGCAAGCAGAACATTTTCAAGATGCTGTGGGTTTGAGCACTGAAACGTGGAACTTGAGCCACCATCATGATGATGATCAAGTTCATGCACTTCCTCCTCTCACAGTGAGTGTAGGGTTGGACACCACAAATTATTTGCCACCATTGATAGAGAACGTGGACAACAACATGGTCCCAATTGAGGTACAATCTTGTACTATGGATGAGCAAGGAGATATAGCACTAGAGTGCTTGCAGAGGCAAGGGTTAAATGAGTGGGTAGTGGAGACGCAGCAACATTGTCCTAACTTTCTTTTTTGGGACAGTGTTGAAGGACAACTTGGTGGGGAAGAACTAGCACCAAATTCATCAAATGTGGAAGCAAATACACTTTCTCCTTTTCCTTCTTCTTTGTGA 990 0.4222 MGHHSCCNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHGVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRKTSMSSTTIAQSIDRNSSQFNYNSNLLDHFQFPNQDNNNNLQTKPPPIQETLFSSTCPLFMFDTTTSSLEGTATDNCNSTTVQAEHFQDAVGLSTETWNLSHHHDDDQVHALPPLTVSVGLDTTNYLPPLIENVDNNMVPIEVQSCTMDEQGDIALECLQRQGLNEWVVETQQHCPNFLFWDSVEGQLGGEELAPNSSNVEANTLSPFPSSL 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2312 329 CDD SANT 69 112 IPR001005 -
Aed5g2312 329 PANTHER MYB TRANSCRIPTION FACTOR 1 328 - -
Aed5g2312 329 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Aed5g2312 329 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Aed5g2312 329 CDD SANT 17 61 IPR001005 -
Aed5g2312 329 MobiDBLite consensus disorder prediction 309 329 - -
Aed5g2312 329 Gene3D - 6 66 - -
Aed5g2312 329 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Aed5g2312 329 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Aed5g2312 329 Gene3D - 68 141 - -
Aed5g2312 329 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Aed5g2312 329 PANTHER MYB DOMAIN PROTEIN 55 1 328 - -
Aed5g2312 329 SMART sant 66 114 IPR001005 -
Aed5g2312 329 SMART sant 13 63 IPR001005 -
Aed5g2312 329 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Aed5g2312 329 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2312 Aed-Chr5 24842966 24845341 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2312 1 313 MYB Transcription Factor Family AT1G63910 50.708 3.63e-103 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aed5g2312 Myb_DNA-binding 5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2312 K09422 K02947 gmx:100803556 506.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1737 11 20934343 20936971 Aed5g2312 5 24842966 24845341 PCT