Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2306 ATGGCTCGACAATTGTGTGAAGACAAATCCAACAAGAATATGGCTTCATCAAATGGGTTGTTCTACTCAGATGTGTCATCCAACAATCAACCCCATCTGATGAACCACATCCAAGGCTTTGTGAGCGACCCAGAGATGTTCAACCTCACCACTGGCATGGAGATGATAGGGTTTTCCAAGAATCTTCAGCAACACAACGAAACCAACGGTGCCATGTGGAAAAGTTTCTTCAGCAAACCAGGTCAACAGGCGGGTTCTTCCTCTTCCAAAACGATGAACGAGTCTTCTACGGCCAATTTCTACAACCAGCAGCATCATGAGTATAATAATAACAAGCGAGACTTCACATCAGGGGTTTCTGTTTCTGAGACAAGTAGCGAGAACTTAATTGTCGGTGGTGCCCCGTGGCAACAAGAGAACAACAGGTTAATGGTTGATGATTCTTCCTTAAGGTGCGTCTTCCCTTGTGAAAGTAACGAAAGGCCGAGTCAAGGCCTTTCACTCTCTCTTAGTTCAACCAACCCTTCAGGTATTGGCTTGCAATCTTTTGAGCTAAGACAAACAAACCATCATCACCATCTTTCTGATAATTTTGTTTCAAGAGGGGGCTTTTTCGAAAAACCAGTAGTCAATGATCAACAACAACAACAACAAATGTTTCAAGATGGGAATATTTATCATCAGGGGCATTTCCTAATCAAGAACTCCAAGTTCTTGGTGCCTGCACAGGTCCTTCTGAACGAGTTTTGTTGTCTAGGAACAAAGGAAAATGATGTGGCAAAGCAAAAGTACTCTCAAAAGAACAAGCAGTTGGAAGAAGCTGGTGGTGGTTCCTTAAAGAACCATTCCCTTAGCTCTCTTGAATTTGTTGAATTGCAGAAGAGAAAGACAAGGCTGCTCGCGATGCTGGAAGAGGTTGATAGAAGATACAAACATTACCGTAACCAAATGAAGGCTGTGGTGTCGTCGTTTGAAGCAGTGGCGGGTAATGGGGCAGCCACAGTTTACTCAGCTTTGGCATTGAGAGCCATGTCAAGGCATTTTAGGTGTTTGAAGGATGGAATAATGGATCAAATTGAAGGCGCAAGAAAAGCCATGGGAGAGAAAGATCACGTTGCACCAGGCACAACAAGGGGCGAGACACCTAGGCTTAGAATGCTTGACCAATCACTGAGACAACAAAGGGCCTTTCAGCAAATTAGCATGATGGAAACACATCCTTGGAGACCCCAACGTGGCCTTCCCGAACGATCCGTTTCAGTTCTCAGAGCTTGGCTTTTCGAGCACTTTCTCCATCCGTACCCAAGCGATGTTGATAAACATATTCTAGCCCGCCAAACCGGTCTCTCCAGAAGCCAGGCACGTGTGTCAAATTGGTTTATTAACGCGAGGGTGAGGCTGTGGAAGCCGATGGTGGAGGAAATGTATTTGGAAGAAGAGAAGGAGAAACAAAACGACGTAGCATCGTCGGAGAATATTCCGGAAGAGGATAAAAAGGCGCGACGCGAGGATGATGACGAGAAGCCAACGCAGGGTCGACTCCTTCGAATTGACTCGGAGTGCATGTCGTCTATCGTGTACAACCCGGATGACAAAAACGACACAAAGAGCGGCAAAAGAACCATGCAAAACGACAACGAAATGGAGGCATTCGGGACGGTGGAGCTTGACTTTTCATCATACACGACGACGACGACGCAGCAGCAGCAGCAGTCGTCGAGCGGCGTGTCGTTGACGCTGGGGTTACAGCAGCACGGTGAAAGCGGGGTGAGTTTAGCGTTCTACCCGCGGGAGCAGATTGAAACAGTTCAGTACTCTCTATTGGATAGCGAGGGACAAAACATCATGCCCTATAGGAATCTCACGGGGACACACTTGCTTCATGATTTGGTTTGA 1896 0.4662 MARQLCEDKSNKNMASSNGLFYSDVSSNNQPHLMNHIQGFVSDPEMFNLTTGMEMIGFSKNLQQHNETNGAMWKSFFSKPGQQAGSSSSKTMNESSTANFYNQQHHEYNNNKRDFTSGVSVSETSSENLIVGGAPWQQENNRLMVDDSSLRCVFPCESNERPSQGLSLSLSSTNPSGIGLQSFELRQTNHHHHLSDNFVSRGGFFEKPVVNDQQQQQQMFQDGNIYHQGHFLIKNSKFLVPAQVLLNEFCCLGTKENDVAKQKYSQKNKQLEEAGGGSLKNHSLSSLEFVELQKRKTRLLAMLEEVDRRYKHYRNQMKAVVSSFEAVAGNGAATVYSALALRAMSRHFRCLKDGIMDQIEGARKAMGEKDHVAPGTTRGETPRLRMLDQSLRQQRAFQQISMMETHPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQARVSNWFINARVRLWKPMVEEMYLEEEKEKQNDVASSENIPEEDKKARREDDDEKPTQGRLLRIDSECMSSIVYNPDDKNDTKSGKRTMQNDNEMEAFGTVELDFSSYTTTTTQQQQQSSSGVSLTLGLQQHGESGVSLAFYPREQIETVQYSLLDSEGQNIMPYRNLTGTHLLHDLV 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2306 631 SUPERFAMILY Homeodomain-like 409 476 IPR009057 -
Aed5g2306 631 Gene3D - 411 475 - -
Aed5g2306 631 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 599 - -
Aed5g2306 631 Pfam Associated with HOX 233 355 IPR006563 -
Aed5g2306 631 MobiDBLite consensus disorder prediction 480 515 - -
Aed5g2306 631 ProSiteProfiles 'Homeobox' domain profile. 405 470 IPR001356 GO:0003677
Aed5g2306 631 CDD homeodomain 408 471 IPR001356 GO:0003677
Aed5g2306 631 SMART prehox3 227 357 IPR006563 -
Aed5g2306 631 SMART HOX_1 408 474 IPR001356 GO:0003677
Aed5g2306 631 MobiDBLite consensus disorder prediction 480 514 - -
Aed5g2306 631 PANTHER HOMEOBOX PROTEIN BEL1 HOMOLOG 1 599 - -
Aed5g2306 631 Coils Coil 296 316 - -
Aed5g2306 631 Pfam Homeobox KN domain 425 466 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2306 Aed-Chr5 24805553 24809533 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2306 139 631 Homeobox Transcription Factor Family AT5G41410 45.601 3.11e-130 394
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2306 - - gmx:100787954 916.376
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1730 11 20888655 20893416 Aed5g2306 5 24805553 24809533 PCT