Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2304 ATGGGTTTTCCGGTGGGGTATTCGGAGCTCCTCTTTCCAAAGCTTCTCCTCCACATCCTGTCCCTCTTAGGCCTCCTAAGGAAGCTCATATGCGGCCTCCTTCGCTTCATGGGCCTCCACGATTTCCTGGAGCCCGACATTACCTGGCCCGAAAACCCGACGACCCAAATAATGGCCGACTTGGAATCCGTGTCGGCGACGCTAATCCGGGAAATCCTGCCGGTGGTGAAGTTCCGGGAGCTGGTGGACCCCCCGGAGACGTGCGCAGTGTGTCTGAGCGAGTTCGAGGAAAACGATGAGATAAGACGGCTGGCGAATTGTCGACACATATTCCACCGAGGATGTTTGGACCGTTGGATAAGGTACGATCAGAGAACGTGCCCTCTCTGCAGAACGGCTTTCATACCGGACGAAATGCAAGCTGCTTTCATCGAGAGACTCTGGGCTGCCTCTGGGATCCCTGAACTCTACGCTGAATATCCACATGTTGCTCCTTTGTAG 501 0.5509 MGFPVGYSELLFPKLLLHILSLLGLLRKLICGLLRFMGLHDFLEPDITWPENPTTQIMADLESVSATLIREILPVVKFRELVDPPETCAVCLSEFEENDEIRRLANCRHIFHRGCLDRWIRYDQRTCPLCRTAFIPDEMQAAFIERLWAASGIPELYAEYPHVAPL 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2304 166 SMART ring_2 88 130 IPR001841 -
Aed5g2304 166 PANTHER BRH1 RING FINGER PROTEIN 1 160 - -
Aed5g2304 166 Pfam Ring finger domain 87 131 IPR001841 -
Aed5g2304 166 SMART ringv_2 87 131 IPR011016 GO:0008270
Aed5g2304 166 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 54 136 IPR013083 -
Aed5g2304 166 SUPERFAMILY RING/U-box 68 137 - -
Aed5g2304 166 ProSiteProfiles Zinc finger RING-type profile. 88 131 IPR001841 -
Aed5g2304 166 CDD RING-H2 88 131 - -
Aed5g2304 166 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2304 Aed-Chr5 24781324 24781824 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2304 1 152 C3H Transcription Factor Family AT1G63840 57.325 1.18e-58 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2304 K16281 - gmx:100817079 253.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1728 11 20874449 20874928 Aed5g2304 5 24781324 24781824 PCT