Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2302 ATGTCTTCTGATCTCTATGCTTATGACACCACCACCTTCCACACACATTCAAACTCAGACTTGGTTTCATCTGATGGAGAACTTCCTTTTCTCTCAGATCACTCTTTTCCTTTCTTCTCTTCTCAAGAGAATGCTCTGGACCCATTTTCCCCTTCTTTTTTCTCTTTCTCCCCTCCGAGTTCCCACTTGGAAAGTCTTAGTCTTTACCATGCTAACCGCGTGCAGCAGCCTCTGGCAAATGAATTTGGAAGTTTCCCAGCTTCTGAAGTGAAAAGTGAGGAATGCCAACTAGGTGTTGTTGATTATGTCTACGGTGGTGCTGAGAATTTTTCAAAGTACATGCAGAGGAGCCTCAGCAGCAACTCTTACGAAGGGAAACCTTACATTGACACTCCAAAATTTCAAAGGCATGACATGAGTTCCCCTGAAGACAACAGTGTCTTTGGTTTTGGTGGACAAATGAGAAGGGTTTGCAGCACAGGGGATTTGCAGGTTGTTTTAATTGTTGAGCAGAACATGAAGGCAAATCACACGATGTCTCCAACGGAGGCGCCTTTGTTGGAAGAATCGAACTTCAAAGTAGGGCGTTACAGTGCCGAGGAAAGAAAAGAAAGAATTTCTAAATACAGAGCCAAGAGAACCCAGAGGAACTTTAACAAAACCATTAAGTATGCATGCCGAAAAACACTAGCAGATAATCGACCACGCATACGTGGCAGATTTGCCCGCAACGACGAAGCCAGTGAGACTCCCAAGGTTTCATGTTCTACCCGAGATGAAGATGATGTCGATTTCTGGATTGAAGAATTGCGATTGCATGAAGAGCAAGACGATGTAACAGAGGGAGCAGAACAGTACTTGAGAAATTATGGAGCTAGCCAGTTTCAATATGGCTTTCGAGTTTAG 906 0.4393 MSSDLYAYDTTTFHTHSNSDLVSSDGELPFLSDHSFPFFSSQENALDPFSPSFFSFSPPSSHLESLSLYHANRVQQPLANEFGSFPASEVKSEECQLGVVDYVYGGAENFSKYMQRSLSSNSYEGKPYIDTPKFQRHDMSSPEDNSVFGFGGQMRRVCSTGDLQVVLIVEQNMKANHTMSPTEAPLLEESNFKVGRYSAEERKERISKYRAKRTQRNFNKTIKYACRKTLADNRPRIRGRFARNDEASETPKVSCSTRDEDDVDFWIEELRLHEEQDDVTEGAEQYLRNYGASQFQYGFRV 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2302 301 Pfam CCT motif 202 244 IPR010402 GO:0005515
Aed5g2302 301 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 13 297 IPR045281 GO:0009909
Aed5g2302 301 ProSiteProfiles CCT domain profile. 202 244 IPR010402 GO:0005515
Aed5g2302 301 PANTHER CCT MOTIF FAMILY PROTEIN 13 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2302 Aed-Chr5 24768736 24770925 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2302 198 253 C2C2-CO-like Transcription Factor Family AT5G24930 48.214 1.42e-10 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Aed5g2302 CCT 8.4e-18 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2302 - - gmx:102665661 404.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1726 11 20867279 20868543 Aed5g2302 5 24768736 24770925 PCT