Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2300 ATGGGCGGTTGCTGCTGTTGTTGTTCTACTAAGGAGACTGTGTTAAGCGTTCCACCTGCGTACTATTATCAGTATCCAAGAGCATCAGAAGAGCATGTTCCTCTATCATCTCACCCGGCTGCTGCTTCTGCTTTCTCTGGGAGGCTCTTGGTTGATACTAATCTAGATACTTCATCTCCTGATACTTATAGACCTCCTCCTACTCCTATCCCTTTCAATGTTACGTTAGTTACCACTCAAACTCCACCTGCGGCTCAAGAAATTCGTGGTGACAAGAATAATACTTCCTTGCATTCTACAAATTCTAATGCAATTCAAGAACCAGTTACTGGAGACAATCATGAGACTTCAGCTAAGTTGGAAGAGCTGAAGGAATTAGAGTGCAAAGTTCAGACTGATCTAGACCTAGATTCTGCAAAGGGTTCCGAAATTGAACTTGCAAAGTCCGGAAAACATATAGATTTAGTAGAGGAGGAGGATACATGCCCAATTTGTTTAGAAGAATATGATGCAGAGAATCCAAAACTCGCAACAAGATGTGACCATCATTTTCACCTTGCATGCATTCTGGAATGGATGGAAAGAAGTGAATCTTGCCCTGTGTGCGATCAGGATTTGATTTTCGACCCTCCCATTGAATAA 642 0.4221 MGGCCCCCSTKETVLSVPPAYYYQYPRASEEHVPLSSHPAAASAFSGRLLVDTNLDTSSPDTYRPPPTPIPFNVTLVTTQTPPAAQEIRGDKNNTSLHSTNSNAIQEPVTGDNHETSAKLEELKELECKVQTDLDLDSAKGSEIELAKSGKHIDLVEEEDTCPICLEEYDAENPKLATRCDHHFHLACILEWMERSESCPVCDQDLIFDPPIE 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2300 213 ProSiteProfiles Zinc finger RING-type profile. 162 203 IPR001841 -
Aed5g2300 213 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 213 - -
Aed5g2300 213 SUPERFAMILY RING/U-box 156 209 - -
Aed5g2300 213 MobiDBLite consensus disorder prediction 86 113 - -
Aed5g2300 213 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN 1 213 - -
Aed5g2300 213 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 140 207 IPR013083 -
Aed5g2300 213 Pfam Ring finger domain 160 202 IPR001841 -
Aed5g2300 213 SMART ring_2 162 202 IPR001841 -
Aed5g2300 213 MobiDBLite consensus disorder prediction 86 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2300 Aed-Chr5 24730186 24733079 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2300 1 209 C3H Transcription Factor Family AT5G41350 52.358 6.55e-67 203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2300 - - gmx:100816369 381.719