Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2298 ATGGAAGAATGGGCAACATTCTCAAATGGGTCTTCCTTAGATTGCCTTGGACTTGACACTGCTGGTGCATTCCCTGGAAATGGTCGTTGCCTAGGAGAGGACAATGGCAAACTTAAACAGAAGGACTTGTTCTACAAACTTTTCCCTATTTACCTGAAGGATTATTGTTCTAAAGGTGGTGTTCGGCCGTTTCCAGTTTTAGTCGGTGGCCAACGGCTGGATTTGTACAAACTGTTTTCCCTGGTGAAGGAAAGAGGTGGGTATGCCCTGGTGTCAAAAAAGGGATTGTGGAGTTCTGTGACCAAGGAATTGGGTTTGAAACTTGAGGTTTGCTCGTCTGTGAAATTGGTTTTTGACAAGTATCTGAATCACTTTGAAAGGTGGCTCAAGAAAACCTTGGAAGAGAAGAATTTTAAAAATGGGAACCATGGGTTTGATTGGGGTTTAAAGTGGTTGCCATTGGATTTGGAGAAAGAGTTCAGAGCCCTGTTATGTCCAAATCTAAAGGACAAAGATGATGATGATGATAAACTTGTCAAATTAGAATCAATTAAAAAAAAGAAAAATACTGATTTGGCTAACCACAAGAATGGTAATAATCTGTTGGACACCAAAGATCAAAATAATAAATCTGAGGATGTCCATCACACTGAAGGTGATAATGACAAAAAAATCGCTAATGGCATTAAGGACAATCCTGCTTCCTTGGGTGCAGAAGGTGCTGAGAAGGAATTTAACCTGCGCAAACGCAAACGGGATGCATTATCTGGGATGCTAAACTGGATGAAACATATTGCAAAGCATCCTCTTGATCCTTTAACTCAACCGATACCAAAACCATCAAAGTGGAAGGAGTATAAAGGCCAGGACGTTTTTGGTCAATTTCTGAGGGCAAGAGAGGTTCTGTCACTGAGACAGCATGAAGAACGAAACTGTGGATGGTCTTCTTCGCAGAATCAGAAGATGCACCCGGCCATGTATGAGGATCATGATGCTCTTGGTCACCATGCTACAGGGAAATTGAGATGCAGTGAAAGGCTGCCTTCCTCTGTTAAATCTCGATCGTGCTCATGCTGCAAACCATTTCCCCCCAACGGAAATAGATTGGCAAGTTCGCACAATATGGAGGCAGAAAAATGTCCTCTGGAGAAAACAACACAAACAATAGATGTATTGGCTGCAAAAACAGTAGCTGAACCATCTGGGGATGAGTCTCTTGAAAAGCAAGTTTCTGTAGGTCCTCGTTTTCAAGCAGAAGTCCCAGAATGGACTGGTGTAGTTTCTGAGAGTGACTCTAAATGGTTGGGCACACAAGTATGGTCTTTGAAAAATGACACAGAACCCGCTACTGAAACAGATCTTGGGAGAGGAAGACAAGAGAAGTGTAGCTGTGAATTTCATGGTTCTGTTGCATGTATTAGATTACATATTGCTGAAAATAGGATGAAATTGAAGCTTGAATTGGGTTCTGAATTTTACCATTGGGGATTTGATCGTATGGGCGAGGAAGTTTCACTTCAATGGACAATTGAAGAAGAAAAGAGATTTAAGGATATCATGAGATCAAATATTCCCTCCAAAAGTAAATATTTTTGGAACAATCCATCCAAATACTTTCCAATGAAGACAAGAAGAAACTTAGTGAGCTATTACTTCAATGTATTTCTTATTCAACTAAGAACCTATCAGAATCGGGTGACTCCGAAGAATATTGATAGTGATGATGATGAAGTAGAATTTGGATCTTGTAGTGGTGGTTTTGGGATGGAAGCTGTCAAGGGTCCTGGTGATGATTTCCTGGAGTGTTCTCTGAACAAGCAGTGCGCTGATTTCGAATAG 1839 0.41 MEEWATFSNGSSLDCLGLDTAGAFPGNGRCLGEDNGKLKQKDLFYKLFPIYLKDYCSKGGVRPFPVLVGGQRLDLYKLFSLVKERGGYALVSKKGLWSSVTKELGLKLEVCSSVKLVFDKYLNHFERWLKKTLEEKNFKNGNHGFDWGLKWLPLDLEKEFRALLCPNLKDKDDDDDKLVKLESIKKKKNTDLANHKNGNNLLDTKDQNNKSEDVHHTEGDNDKKIANGIKDNPASLGAEGAEKEFNLRKRKRDALSGMLNWMKHIAKHPLDPLTQPIPKPSKWKEYKGQDVFGQFLRAREVLSLRQHEERNCGWSSSQNQKMHPAMYEDHDALGHHATGKLRCSERLPSSVKSRSCSCCKPFPPNGNRLASSHNMEAEKCPLEKTTQTIDVLAAKTVAEPSGDESLEKQVSVGPRFQAEVPEWTGVVSESDSKWLGTQVWSLKNDTEPATETDLGRGRQEKCSCEFHGSVACIRLHIAENRMKLKLELGSEFYHWGFDRMGEEVSLQWTIEEEKRFKDIMRSNIPSKSKYFWNNPSKYFPMKTRRNLVSYYFNVFLIQLRTYQNRVTPKNIDSDDDEVEFGSCSGGFGMEAVKGPGDDFLECSLNKQCADFE 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2298 612 SUPERFAMILY ARID-like 45 131 IPR036431 GO:0003677
Aed5g2298 612 Gene3D - 32 140 IPR036431 GO:0003677
Aed5g2298 612 CDD ARID 40 126 - -
Aed5g2298 612 SMART ARID_2 35 126 - -
Aed5g2298 612 Pfam ARID/BRIGHT DNA binding domain 50 126 IPR001606 GO:0003677
Aed5g2298 612 ProSiteProfiles ARID domain profile. 38 130 IPR001606 GO:0003677
Aed5g2298 612 MobiDBLite consensus disorder prediction 190 242 - -
Aed5g2298 612 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 1 612 - -
Aed5g2298 612 MobiDBLite consensus disorder prediction 206 227 - -
Aed5g2298 612 ProSiteProfiles ELM2 domain profile. 408 454 IPR000949 -
Aed5g2298 612 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 1 612 - -
Aed5g2298 612 SMART bright_3 39 131 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2298 Aed-Chr5 24719851 24727105 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Aed5g2298 ARID 4.8e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2298 - - gmx:100819320 1052.74