Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2289 ATGGAGAATAAAGAAGAAGATGTTAAGGTTGGAGCAAACAAGTTTTCAGAGAGGCAACCAATAGGAACAGCAGCACAGGGTGACAAGGACTACAAGGAGGAACCACCGGCTCCATTGTTTGAGCCTGGCGAGCTAAAGTCATGGTCCTTCTACAGAGCCGGAATAGCTGAGTTTGTGGCGACATTCTTGTTCCTCTACATTACCATCTTAACTGTGATGGGTGTCAACAGATCAACCTCCAAGTGTGCCTCTGTTGGCATTCAAGGCATTGCTTGGGCCTTTGGTGGCATGATCTTTGCCCTTGTCTACTGCACTGCTGGAATTTCAGGGGGACACATCAACCCAGCTGTGACCTTTGGTCTCTTTTTGGCAAGGAAGCTGTCCCTAACAAGGGCACTGTTCTACATTATAATGCAGTGTCTTGGAGCCATCTGTGGGGCTGGTGTGGTGAAGGGATTTGAGGGTAACGCTAGGTATGAGTTGTTCTCAGGTGGTGCCAACTTTGTTGCCCCTGGTTACACAAAGGGTGATGGACTTGGAGCTGAGATTGTTGGCACTTTTGTTCTTGTCTACACCGTTTTCTCTGCCACTGATGCCAAGAGAAACGCCAGAGACTCTCACGTTCCTATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGCTACAATTCCCATAACAGGAACTGGCATTAACCCAGCTAGGAGTCTCGGGGCTGCCATCATCTACAACAGAGACCATGCATGGGATGACCAATGGATATTCTGGGTTGGACCTTTCATTGGAGCTGCCCTTGCTGCTCTGTATCACCAGATAGTCATCCGAGCCATTCCTTTCAAGACAAGGGCTTAG 864 0.4873 MENKEEDVKVGANKFSERQPIGTAAQGDKDYKEEPPAPLFEPGELKSWSFYRAGIAEFVATFLFLYITILTVMGVNRSTSKCASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYIIMQCLGAICGAGVVKGFEGNARYELFSGGANFVAPGYTKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNRDHAWDDQWIFWVGPFIGAALAALYHQIVIRAIPFKTRA 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2289 287 ProSitePatterns MIP family signature. 112 120 IPR022357 -
Aed5g2289 287 Gene3D Glycerol uptake facilitator protein. 37 285 IPR023271 -
Aed5g2289 287 PANTHER AQUAPORIN PIP1-2-RELATED 1 286 - -
Aed5g2289 287 SUPERFAMILY Aquaporin-like 44 279 IPR023271 -
Aed5g2289 287 Pfam Major intrinsic protein 44 274 IPR000425 GO:0015267|GO:0016020|GO:0055085
Aed5g2289 287 TIGRFAM MIP: MIP family channel proteins 56 274 IPR000425 GO:0015267|GO:0016020|GO:0055085
Aed5g2289 287 MobiDBLite consensus disorder prediction 1 33 - -
Aed5g2289 287 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 286 IPR034294 -
Aed5g2289 287 CDD MIP 52 277 IPR000425 GO:0015267|GO:0016020|GO:0055085
Aed5g2289 287 PRINTS Major intrinsic protein family signature 131 150 IPR000425 GO:0015267|GO:0016020|GO:0055085
Aed5g2289 287 PRINTS Major intrinsic protein family signature 52 71 IPR000425 GO:0015267|GO:0016020|GO:0055085
Aed5g2289 287 PRINTS Major intrinsic protein family signature 94 118 IPR000425 GO:0015267|GO:0016020|GO:0055085
Aed5g2289 287 PRINTS Major intrinsic protein family signature 181 199 IPR000425 GO:0015267|GO:0016020|GO:0055085
Aed5g2289 287 PRINTS Major intrinsic protein family signature 217 239 IPR000425 GO:0015267|GO:0016020|GO:0055085
Aed5g2289 287 PRINTS Major intrinsic protein family signature 257 277 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2289 Aed-Chr5 24652884 24655070 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2289 1 287 Major Intrinsic Protein MIP AT3G61430 86.760 1.17e-178 492
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2289 K09872 - gmx:100793242 563.148