Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2276 ATGGGTTGTGGCTTTTCCAAGTACACAGCATGCTGCATGGGTACTGAGCAAGATGGTCCGGCTGCTGAGGCTCAGGTTGATGGTGGAAACGAAGACAATGCTGTTGAGGGCATTGACTTGCCACGGTTTCATGAATTCACAGTTGATCAGCTTAGGAGGGCTACCTCTGGATTTGCCATTGAAAATATAGTTTCTGAACATGGAGAAAAGGCTCCAAATGTGGTCTATAAAGGGAGACTTGATAATCAGATGCGGATTGCTGTCAAACGGTTCAACAGAAATGCCTGGCCTGAAGCGCAGCCTTTTTTGATATCCTATGGTGGTTTGGGGTTCAATCAAGAATTAGTTTGTTTTATACATGCTTGTGTTTTTTCACACATTTGCATTTCCTTAGCTAGGATAAATAAATACAGGACAGTCCAACTAAGGGAAACTCAGCCCATGAGATGGGCAATGCGAATGAGAGTTGCTCTGTGCCTTGCCCAAGCTCTAGAGTACTGTACCAGCAAAGGACGTGCACTATATCATGATCTGAATGCTTACAGAGTTCTTTATGATGATGACTACAATCCTAGACTTTCATGCTTTGGTCTGATGAAAAATAGTAGAGATGGGAAAAGTTACAGTACAAATTTGGCGTTTACTCCACCTGAATATCTGAGGACAGGCAGAGTTACTCCAGAGAGTGTAACTTATAGCTTTGGAACCCTTTTGCTTGACCTCCTTAGTGGGAAGCATATTCCTCCAAGCCATGTCATTGACCTGATTAGAATCAGGAACCCTGAGATGCTATCAGAGGGGACTGGACAATTTTCAAATGATCAGGGGACTGCCCTTGACCTGATTAGAGACAAGAACCTTCAGATGCTATCAGACTCTTGCTTAGAAGGAGAGCTTTCAAACGATGATGGGACTGAATTAGTGCGTCTAGCCTCACGATGTTTGCAATCTGAACCACGAGAGCGTCCTAATCCAAAGTCACTGGTTGCTGCTCTAATACCTCTACAGAAGGATTCTGAGGTTCCGTCTCATGTGCTGATGGGTATACCAGATGGTACAGCTGCTTTTCCCCTTTCACCTCTTGGAGAAGCTTGTCTACGAATGGATCTGACTGCCCTGCATGAGGTGATGGAGAAAATTGGGTATAAAGATGATGAGGGTGCAGCAACTGAGTTCATTGAGGTTGGCACCATGGTTTCTCCAACAATTTTGGCACGTCGTAGTCTATGTTATCTGATGAGCAATATGCCGGATGAAGCACTTAATGATGCAATGCAAGCACAAGTTATAACCCCCGTTTGGTACATTGCGTTTTATTTACAAGCTGTTGCTCTTTTAGCACTGGGCAAGGAGAGTGATGCCCAAGTGGCACTTAAAGAGGGTTCTTCGCTTGAAACTAAAAAAAACACAAATTAG 1416 0.44 MGCGFSKYTACCMGTEQDGPAAEAQVDGGNEDNAVEGIDLPRFHEFTVDQLRRATSGFAIENIVSEHGEKAPNVVYKGRLDNQMRIAVKRFNRNAWPEAQPFLISYGGLGFNQELVCFIHACVFSHICISLARINKYRTVQLRETQPMRWAMRMRVALCLAQALEYCTSKGRALYHDLNAYRVLYDDDYNPRLSCFGLMKNSRDGKSYSTNLAFTPPEYLRTGRVTPESVTYSFGTLLLDLLSGKHIPPSHVIDLIRIRNPEMLSEGTGQFSNDQGTALDLIRDKNLQMLSDSCLEGELSNDDGTELVRLASRCLQSEPRERPNPKSLVAALIPLQKDSEVPSHVLMGIPDGTAAFPLSPLGEACLRMDLTALHEVMEKIGYKDDEGAATEFIEVGTMVSPTILARRSLCYLMSNMPDEALNDAMQAQVITPVWYIAFYLQAVALLALGKESDAQVALKEGSSLETKKNTN 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2276 471 Gene3D Tetratricopeptide repeat domain 386 471 IPR011990 GO:0005515
Aed5g2276 471 SUPERFAMILY TPR-like 401 464 IPR011990 GO:0005515
Aed5g2276 471 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 1 279 IPR045845 GO:0004672|GO:0009742
Aed5g2276 471 Gene3D Phosphorylase Kinase; domain 1 34 117 - -
Aed5g2276 471 ProSiteProfiles Protein kinase domain profile. 61 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed5g2276 471 Gene3D Transferase(Phosphotransferase) domain 1 136 349 - -
Aed5g2276 471 SUPERFAMILY Protein kinase-like (PK-like) 39 341 IPR011009 -
Aed5g2276 471 PANTHER TPR DOMAIN KINASE 277 391 - -
Aed5g2276 471 PANTHER TPR DOMAIN KINASE 1 279 - -
Aed5g2276 471 PANTHER TPR DOMAIN KINASE 390 471 - -
Aed5g2276 471 Pfam Protein kinase domain 147 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed5g2276 471 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 390 471 IPR045845 GO:0004672|GO:0009742
Aed5g2276 471 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 277 391 IPR045845 GO:0004672|GO:0009742
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2276 Aed-Chr5 24562498 24573305 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2276 46 357 Glycoside Hydrolase AT3G07070 28.267 1.64e-24 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Aed5g2276 Pkinase 1.1e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2276 K14500 - gmx:100797107 754.207