Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2275 ATGGATGGGAGAGAAGCTATGGCATTCTCTGGTGGCTCAGCTCCATATTACATGCATAAAGGAGGTTTTGGAGGGTCTGGCTCTGGAACACAGAGTGGGGGAGGAGGGGGGTTCCAACCAGCCCCTGGGTTCAGACCTTTGTCAAATACTAGCATTCAAGCTGAGTCAAATGTAAGGGGTCAGGGTGGTGGTTCTTTAGGGTCTAGTTCCCCATTTTCAGTGGAGCCTCCTGAGGGCCATGCCAATTTTAACCATGGCATTGGGGGACCTTCAAGTGAGCCTGTGAAGAAGAAAAGAGGGAGACCCCGTAAATATGGTCCTGATGGTGCAGTTTCTTTGAGACTGTCTCCAATGTCTGCACCTGCAAACTCCACTCTGGATGCAACTGAAACCACCCCTTCTCAGAAAAGGGCTAGAGGCCGCCCTCCTGGTTCTGGAAGGAAGCAACAGCTAGCCTCCTTAGGTGAATGGATGAATAGTTCAGCAGGGTTGGCCTTTTCGCCTCACGTTGTCACTATTGGAGTTGGGGAGGACATTGTGGCAAAATTATTGTCATTATCACAGCAGAGACCAAGGGCTCTGTGCATCATGTCGGGCAATGGGACAGTTTCTTCAGTCACTCTGCGACAGCCTGCTTCTACCAATGCCAGTGTAACTTTCGAGGGACGATTCCAAATACTATGCTTGTCTGGTTCTTACTTGGTTGCCGAAGATGGCGGACCCTCCAATAGAACTGGTGGCATTAGTGTTTCACTCTGTAGTCCTGATGGTCATGTTATTGGCGGTGGTGTTGCTGTGCTTATTGCTGGAAGCCCTGTGCAGGTGGTACTGTGCAGTTTTGTGTATGGTGGGGGTGGCTCAAAGACCAAGTCTAAACAAGGAATCACTCTCAAAGATGAAAGTTCTGAGCCATCTCCTCAGCATAACGATGAATTAGCTTCTCCAGCCAGTGCTCCTGCTCCACCTGGTCAAAACTACCTTCCTCTTTCTGCAACAAACCTTTGGCCTGGATCACGACCAGCAGAGCTGAAAAGCACACACATGCATACTGGCATCGACTTGACTCGAGGGTGA 1074 0.5 MDGREAMAFSGGSAPYYMHKGGFGGSGSGTQSGGGGGFQPAPGFRPLSNTSIQAESNVRGQGGGSLGSSSPFSVEPPEGHANFNHGIGGPSSEPVKKKRGRPRKYGPDGAVSLRLSPMSAPANSTLDATETTPSQKRARGRPPGSGRKQQLASLGEWMNSSAGLAFSPHVVTIGVGEDIVAKLLSLSQQRPRALCIMSGNGTVSSVTLRQPASTNASVTFEGRFQILCLSGSYLVAEDGGPSNRTGGISVSLCSPDGHVIGGGVAVLIAGSPVQVVLCSFVYGGGGSKTKSKQGITLKDESSEPSPQHNDELASPASAPAPPGQNYLPLSATNLWPGSRPAELKSTHMHTGIDLTRG 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2275 357 MobiDBLite consensus disorder prediction 298 312 - -
Aed5g2275 357 CDD DUF296 168 280 IPR005175 -
Aed5g2275 357 PANTHER AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN 1 357 - -
Aed5g2275 357 MobiDBLite consensus disorder prediction 286 357 - -
Aed5g2275 357 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 357 IPR039605 GO:0003680
Aed5g2275 357 MobiDBLite consensus disorder prediction 44 72 - -
Aed5g2275 357 ProSiteProfiles PPC domain profile profile. 160 301 IPR005175 -
Aed5g2275 357 SUPERFAMILY AF0104/ALDC/Ptd012-like 165 282 - -
Aed5g2275 357 Pfam Plants and Prokaryotes Conserved (PCC) domain 168 281 IPR005175 -
Aed5g2275 357 MobiDBLite consensus disorder prediction 1 151 - -
Aed5g2275 357 Gene3D - 168 296 - -
Aed5g2275 357 MobiDBLite consensus disorder prediction 117 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2275 Aed-Chr5 24551946 24557287 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2275 1 357 AT-hook Motif Nuclear Localized (AHL) Family AT1G63470 48.579 4.64e-98 294
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2275 - - gmx:100813888 573.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1715 11 20774116 20777736 Aed5g2275 5 24551946 24557287 PCT