Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2270 ATGCCGAGATATCCCAAGGGCGTGACGGAGGAAGAAGGAAGCAGCAACGTATCGTCCAGAGCACTTTTCTCGGTCACCGGAATGACTTGCTCCGCCTGCGCCGCCTCCGTCGAGAAAGCCGTCAAGCGCCTTCCCGGAATTCGCCAAGCCGTCGTTGATGTTCTCAATAACCGTGCCCAAGTCCTCTTCTATCCTTCCTTTGTTAACGAAGAGACGATTCGCGAGGCCATTGAAGATGGTGGATTCGAAGCCACACTAATGAGAGATGATCATAACGATTCATCTTCTGTTCAGATATGCCGCATAAGAATCCAAGGCATGACATGCACGTCGTGTTCCTCCACCGTTGAATCCGCTCTACAATCAATCCAAGGAGTGGTGAAAGCCCAAGTGGCCCTTGCAACCGAGGAAGCTCAAGTTCACTACACTCCTAACGTTGTTTCCTACAACCAAATCCTCGAAGCTGTCGAAAACACGGGTTTTCAAGCCACGCTTATAAGCACAGGTGAAGACATGAGCAGAATAGACCTTCAAGTCGAGGGAATAAGAACCGGTCGTTCCATGAGACTCATTGAAAACTCTCTTCAAGCCCTCCCTGGTGTCCAAGGTGTAGAGACATATTCTGAGTTGAACAAAGTTTCTCTTTCTTATAAACCAGACTTGACAGGACCTAGAAACTTCATCAACGTGATCGAAGAAACCGGCCAGTCAAGGCGTTTCAAGGCAAAGATTTTCCCTGAAGAAGGAGGAGGAGGAAGGAACAATCATAGGAGGGAGGAAATCAAGCAGTACTATAGATCTTTCTTGTGGAGTTTGGTGTTTACTATTCCAGTGTTTCTAACCTCTATGGTGCTTATGTATATCCCTGGAATTAAGCATGGACTAGATGCCAAAGTTGTGAACATGCTTACTGTGGGGGAGATTATAAGATGGGTGCTTTCTACACCAGTTCAGTTCATTATAGGGAAGAGGTTTTACTCTGGTGCTTACAAAGCATTGCGTCTTCGCTCTCCCAACATGGATGTTTTGATTGCCTTGGGGACAAACGCAGCATACTTTTACTCAGTGTATTCTGTGCTGAGAGCTGCTACATCTCAGGGTTTCAAGGGTACTGATTTCTTTGAGACTAGTGCTATGCTTATTTCCTTTATTTTGTTAGGGAAGTACCTTGAGGTTTTGGCCAAGGGTAAGACATCTGATGCTATTGCCAAGCTCATGAACTTGACACCTGACACTGCTATATTGTTGACCCTGGACAGTGAGGGGAATGTTGTTGGGGAGGAGGAAATTGATAGCAGGTTGATTCAGAAGAATGATGTGATTAAGATTATTCCTGGTGCAAAAGTGGCTTCAGATGGATTTGTCACTTGGGGTCAGAGCCACGTGAATGAGAGCATGATAACAGGTGAGGCACGTCCTGTGGCAAAGAGGAAAGGGGACACTGTTATTGGAGGAACTTTGAATGAGAATGGAGTGTTGCACGTTAAGGCTACGTGGGTTGGATCAGAGAGTGCTCTTTCTCAAATTGTTCGACTTGTTGAGTCAGCACAGATGGCCAAGGCTCCTGTGCAGAAGTTTGCTGACCGCATTTCCAAATACTTTGTGCCTCTGGTTATTTTAGTCTCAGTTTCAACTTGGTTTGCATGGTTTTTAGCTGGAAGGTTTCGTGCTTACCCCAAGTCTTGGATACCATCTTCCATGGATAGCTTCCAGCTTGCTTTGCAGTTTGGGATTTCTGTCATGGTCATAGCCTGTCCATGTGCTTTAGGTTTAGCAACACCAACAGCTGTTATGGTTGGCACTGGAGTAGGTGCATCTCAGGGAATTCTTATCAAAGGTGGTCAAGCATTAGAAAATGCACATAAGGTGAACTGCGTTGTATTTGACAAGACAGGTACTCTCACTATCGGAAAGCCTGTGGTAGTAAATACAAAGTTGTTGACAAATATGGTACTCCGGGAATTCTATGAACTTGTGGCTGCAGCTGAGGTGAATAGTGAGCATCCACTGGCCAAGGCCATAGTTGAGTATGCCAAAAAACTGAGAGATGAAGAGAACCCCACTTGGCCAGAGGCACGGGATTTTGTGTCCATTGCTGGACATGGAGTTAAGGCCATGGTTAGAAACAAGGAAATACTTGTGGGTAACAAGACCTTGATGGCGGAACACAATGTTGCACTTCCTGTTGATGCTGAAGAGCTACTTGCAGAAGCAGAAGCAATGGCTCAAACTGGAATTATAGTGTCTAATAATAAGGAAGTAGTTGGGGTTTTAGCAGTATCTGATCCATTGAAACCAGCTGCACAAGAAGTCATTTCCATTCTCAAGTCTATGAAAATTAGGAGCATCATGGTGACTGGGGACAATTGGGGAACCGCCAATTCTATAGCAAGTGAAGTTGGAATTGAAACTGTTATTGCTGAGGCCAAGCCAGAGCAGAAGGCAGAGCAAGTGAAGGAATTGCAGGTGCATTATTTAAGATTGTGGTTCTAA 2493 0.4537 MPRYPKGVTEEEGSSNVSSRALFSVTGMTCSACAASVEKAVKRLPGIRQAVVDVLNNRAQVLFYPSFVNEETIREAIEDGGFEATLMRDDHNDSSSVQICRIRIQGMTCTSCSSTVESALQSIQGVVKAQVALATEEAQVHYTPNVVSYNQILEAVENTGFQATLISTGEDMSRIDLQVEGIRTGRSMRLIENSLQALPGVQGVETYSELNKVSLSYKPDLTGPRNFINVIEETGQSRRFKAKIFPEEGGGGRNNHRREEIKQYYRSFLWSLVFTIPVFLTSMVLMYIPGIKHGLDAKVVNMLTVGEIIRWVLSTPVQFIIGKRFYSGAYKALRLRSPNMDVLIALGTNAAYFYSVYSVLRAATSQGFKGTDFFETSAMLISFILLGKYLEVLAKGKTSDAIAKLMNLTPDTAILLTLDSEGNVVGEEEIDSRLIQKNDVIKIIPGAKVASDGFVTWGQSHVNESMITGEARPVAKRKGDTVIGGTLNENGVLHVKATWVGSESALSQIVRLVESAQMAKAPVQKFADRISKYFVPLVILVSVSTWFAWFLAGRFRAYPKSWIPSSMDSFQLALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGILIKGGQALENAHKVNCVVFDKTGTLTIGKPVVVNTKLLTNMVLREFYELVAAAEVNSEHPLAKAIVEYAKKLRDEENPTWPEARDFVSIAGHGVKAMVRNKEILVGNKTLMAEHNVALPVDAEELLAEAEAMAQTGIIVSNNKEVVGVLAVSDPLKPAAQEVISILKSMKIRSIMVTGDNWGTANSIASEVGIETVIAEAKPEQKAEQVKELQVHYLRLWF 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2270 830 Pfam haloacid dehalogenase-like hydrolase 623 824 - -
Aed5g2270 830 Gene3D - 594 827 IPR023214 -
Aed5g2270 830 PRINTS P-type cation-transporting ATPase superfamily signature 778 788 - -
Aed5g2270 830 PRINTS P-type cation-transporting ATPase superfamily signature 463 477 - -
Aed5g2270 830 PRINTS P-type cation-transporting ATPase superfamily signature 627 641 - -
Aed5g2270 830 PRINTS P-type cation-transporting ATPase superfamily signature 756 767 - -
Aed5g2270 830 SUPERFAMILY HMA, heavy metal-associated domain 95 169 IPR036163 GO:0046872
Aed5g2270 830 PANTHER ATP7, ISOFORM B 1 823 - -
Aed5g2270 830 SUPERFAMILY HAD-like 622 822 IPR036412 -
Aed5g2270 830 ProSitePatterns Heavy-metal-associated domain. 25 54 IPR017969 GO:0046872
Aed5g2270 830 Gene3D - 712 762 IPR023299 GO:0000166
Aed5g2270 830 Gene3D - 634 711 IPR023299 GO:0000166
Aed5g2270 830 Gene3D - 16 87 - -
Aed5g2270 830 PRINTS Copper-transporting ATPase 1 signature 46 69 - -
Aed5g2270 830 PRINTS Copper-transporting ATPase 1 signature 20 45 - -
Aed5g2270 830 PRINTS Copper-transporting ATPase 1 signature 122 143 - -
Aed5g2270 830 CDD P-type_ATPase_Cu-like 266 822 - -
Aed5g2270 830 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 629 760 IPR023299 GO:0000166
Aed5g2270 830 CDD HMA 102 164 IPR006121 GO:0046872
Aed5g2270 830 ProSiteProfiles Heavy-metal-associated domain profile. 174 240 IPR006121 GO:0046872
Aed5g2270 830 Pfam E1-E2 ATPase 426 605 - -
Aed5g2270 830 Pfam Heavy-metal-associated domain 23 83 IPR006121 GO:0046872
Aed5g2270 830 Pfam Heavy-metal-associated domain 102 161 IPR006121 GO:0046872
Aed5g2270 830 ProSiteProfiles Heavy-metal-associated domain profile. 99 165 IPR006121 GO:0046872
Aed5g2270 830 SUPERFAMILY Calcium ATPase, transmembrane domain M 372 619 IPR023298 -
Aed5g2270 830 Gene3D - 395 517 - -
Aed5g2270 830 SUPERFAMILY HMA, heavy metal-associated domain 168 237 IPR036163 GO:0046872
Aed5g2270 830 Gene3D - 172 245 - -
Aed5g2270 830 SUPERFAMILY Calcium ATPase, transduction domain A 427 513 IPR008250 -
Aed5g2270 830 ProSitePatterns Heavy-metal-associated domain. 104 133 IPR017969 GO:0046872
Aed5g2270 830 SUPERFAMILY HMA, heavy metal-associated domain 20 90 IPR036163 GO:0046872
Aed5g2270 830 PANTHER COPPER-TRANSPORTING ATPASE HMA5-RELATED 1 823 - -
Aed5g2270 830 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 380 823 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Aed5g2270 830 CDD HMA 23 85 IPR006121 GO:0046872
Aed5g2270 830 Gene3D - 98 170 - -
Aed5g2270 830 TIGRFAM TIGR00003: copper ion binding protein 102 163 IPR006122 GO:0005507
Aed5g2270 830 TIGRFAM TIGR00003: copper ion binding protein 23 84 IPR006122 GO:0005507
Aed5g2270 830 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 340 822 IPR027256 GO:0006812|GO:0016021|GO:0019829
Aed5g2270 830 ProSiteProfiles Heavy-metal-associated domain profile. 20 86 IPR006121 GO:0046872
Aed5g2270 830 ProSitePatterns E1-E2 ATPases phosphorylation site. 629 635 IPR018303 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2270 Aed-Chr5 24536954 24540230 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2270 19 822 Primary Pumps ATPases AT1G63440 76.952 0.0 1274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2270 K17686 - gmx:100810141 1485.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1710 11 20732245 20736304 Aed5g2270 5 24536954 24540230 PCT