Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2262 ATGTCATTCAGCGGGACCCAACAGAAGTGCAAGGCTTGCGACAAAACTGTTCACTTCGTCGAAGGTTTAAGTGCCGATGGGGTTCCTTATCACAAGAACTGCTTCAGATGCAGCCATTGCAATGGCCTTCTTGCGATAGGCAACTACTCATCCAGCGAAGGAGTTTTGTACTGCAAGGTGCACTATGAGCAACTCTTCAAGGAAACTGGCAGCTACCCCAAGAGATCCCAGTCTGGTGCAAAGCCTCCAATCGAGCTGAATAAAACACCAAGCAAACTCTCTGCCTTCTTCTCTGGGACCCAAGAGAAGTGTTCAAAATGCAAGAAAACCGTATATCCATTGGAAAAGTTGACCGTGGAAGGTGAGTTTTACCACAAATCATGCTTTAGGTGTGCACATGGAGGATGTTTCCTGACCCCTTCAACCTATGCTGCTCTTGATGGATATCTTTACTGCAAGCCACACTTCTCTCAATTGTTCAAGGAGAAGGGTAGCTACAGTTATCTGTCCAAGCAAACTTCATTGAAGAAGATTGAAAAGCAACAACAAGAAAAAGAGGCTGCGGAGAAAGCAGCAGCAGCAACAGCAGATGATGAGCACACAGATGCAGAGGCAACAGAGGCAGAGACAACAACACCACCAAAGGAAGCTGAGCAAGCTGATGAGGATCACCCCGAGCCAGAACAATAA 690 0.4681 MSFSGTQQKCKACDKTVHFVEGLSADGVPYHKNCFRCSHCNGLLAIGNYSSSEGVLYCKVHYEQLFKETGSYPKRSQSGAKPPIELNKTPSKLSAFFSGTQEKCSKCKKTVYPLEKLTVEGEFYHKSCFRCAHGGCFLTPSTYAALDGYLYCKPHFSQLFKEKGSYSYLSKQTSLKKIEKQQQEKEAAEKAAAATADDEHTDAEATEAETTTPPKEAEQADEDHPEPEQ 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2262 229 ProSiteProfiles LIM domain profile. 102 162 IPR001781 -
Aed5g2262 229 PANTHER OS06G0237300 PROTEIN 1 209 IPR045268 GO:0051015
Aed5g2262 229 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 96 129 - -
Aed5g2262 229 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 130 168 - -
Aed5g2262 229 Coils Coil 171 198 - -
Aed5g2262 229 MobiDBLite consensus disorder prediction 177 229 - -
Aed5g2262 229 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Aed5g2262 229 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Aed5g2262 229 MobiDBLite consensus disorder prediction 177 222 - -
Aed5g2262 229 Pfam LIM domain 104 159 IPR001781 -
Aed5g2262 229 Pfam LIM domain 10 65 IPR001781 -
Aed5g2262 229 Gene3D Cysteine Rich Protein 98 168 - -
Aed5g2262 229 Gene3D Cysteine Rich Protein 4 74 - -
Aed5g2262 229 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 209 - -
Aed5g2262 229 SMART lim_4 9 61 IPR001781 -
Aed5g2262 229 SMART lim_4 103 155 IPR001781 -
Aed5g2262 229 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 74 - -
Aed5g2262 229 CDD LIM1_SF3 6 68 - -
Aed5g2262 229 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2262 Aed-Chr5 24476819 24478407 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Aed5g2262 LIM 2.7e-11 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2262 - K09377 gmx:100499865 370.163