LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed5g2259	ATGTGGGGTTGGATGCTCGGGGAAGGGCGCAGAGCAGCATGGGAGGTGGTGGCGTGCAAGTGGAACCGGGTGGCCCTCCGCAACATGGGTGGCGGTCCGAGAACATTCCCCGGCGGAGTGAGCAAATGGAAGTGGAAGCGCATGCACGAGAAACTCGCCGCTGACAAACAGAAGAGACTCATCGAACAAGAGAAGCAGCTCTACCAAGCTCGCATTCGCTCCCACATCCGCTCCACCCTCTCCCCCGACCATCGCTCCTCCTCCGCCGCCACTCACCCCCCTCTCTCCCCCACGGACCACGTCAAAGCCCTCGCCGACCGCTTCGTCAAAGACGGCGCCCAAGATCTCTGGAACAACCACGACGGTCCCCTGACTCCGACACCAAACCCGACAACACCGACCCCAACTCCGAACCTTAATTTTCGCCACCAACACAGCAGGGGTTACCGCTCTGTTCCCGAGGTTGGGAACAGTCGTGTTGGGGCCCACAAGCATAGGTTTTGGCGAAAGGGGAGTGATGATTCTTCTTCTTCCGGTGAGAGCGAGGGTGAGAGTGAAGTTGAATTGAGTGTGAAGAAGGGTAGTAGTGCTTCTTTGGGGGAATATGATGTCAAGAGAGAGAAGAGAGTTGTGCCCAAGACATCTCAAGAGGTTGAGTTTATCAGGTATGAGCTTAATAAGAGGAAGTTGAGCCAGATTGAGGAACAACAGAGTCATGAACAACAAAGCAATGAAAGCATCCTCAGCAACACAAGATTTGATGAGTGTGGTATATCACTGCAGACGGCCAAGGCACTTTCTTCAGCTGGTTATGTTCATATGACCCGCATACAAGAGGCTAGCCTACCTATTTGCCTTGAGGGGATGGATGCTTTAGTCAAAGCTAAAACTGGCACTGGAAAAAGTGTAGCTTTTTTGCTTCCTGCTGTTGAAACAGTTCTCAAAGCTATGAGAAGCAATACGTCTCGACGGGTGCCCGTGTCTCCGATATATGTTCTTATTCTCTGCCCTACCAGAGAACTCGCTAGTCAAATTGCTGCTGTAGCGAAGGTTTTACTGAAATATCATGATGGCATCGGAGTGCAGACTCTTGTTGGTGGCATACGATTTAAAGTTGACCAAAAACGCCTTGAATCAGATCCATGCCAGATACTTGTTGCTACACCTGGTAGGTTGCTGGATCATATTGAGAATAAGTCTGGAATATCTCTGCGATTAATGGGCTTGCAGATGCTTGTACTTGATGAAGCTGATCATTTACTGGACCTGGGATTTAGAAAGGATGTCGAAAAAATTGTCGATTGTTTGCCCCGTCAAAGGCAATCTTTACTGTTTTCTGCAACCATACCAAAGGAGGTTCGTCGTGTATCCCAGCTTGTCTTGAAAAGGGAACACAAATATGTTGATACAGTTGGAATGGGTTGTGTAGAAACTCCTGTGAAGCAATCTTATCTTATTGCTCCTCACGAATTACAATTTCATTTAGTGTACCATATTCTGAAGGAGCATATCTTGCAAACACCTGATTATAAGGTTATTGTATTCTGTATAACTGGGATGGTGACATCCCTCATGTATAACCTTCTTCGGCAAATGAAAATGAATGTTAGGGAGATACATTCTCGAAAACCTCAGCTCTATCGAACTCGTATATCAGATGAGTTCAAGGAATCCAAACAATTGATTCTTGTCTCGTCTGATGTTTCATCAAGGGGAATGAATTATCCTGATGTTACTTTAGTCATACAGGTGGGAATTCCTTCTGACCGTGAACAATACATACACCGTCTTGGAAGAACAGGTCGGGAAGACAAAGAAGGGGAAGGTGTGTTGTTGATTGCTCCATGGGAAGAGTATTTTTTAGATGAAATCAAGGATCTACCTCTACAGAATTTCCCCTTACCTAATATAGATCCACAGACAAAGCTTAAGATTGAGAATTCAATGACAAAGATTGATAATGAAATCAAAGAAGCAGCTTATCATGCTTGGCTTGGATATTATAACTCCATCAGGGAAATTGGGAGGGAAAAGACCACTATAGCTGAGCTGGCAAACCGATTTTCCGAATCAATTGGTTTACAGAGGGCTCCTGCACTCTTCCGAAAAACTGCAATAAAAATGGGTTTGAAAGACATTCCTGGTATTAGAATTCGTAAATAG	2163	0.4595	MWGWMLGEGRRAAWEVVACKWNRVALRNMGGGPRTFPGGVSKWKWKRMHEKLAADKQKRLIEQEKQLYQARIRSHIRSTLSPDHRSSSAATHPPLSPTDHVKALADRFVKDGAQDLWNNHDGPLTPTPNPTTPTPTPNLNFRHQHSRGYRSVPEVGNSRVGAHKHRFWRKGSDDSSSSGESEGESEVELSVKKGSSASLGEYDVKREKRVVPKTSQEVEFIRYELNKRKLSQIEEQQSHEQQSNESILSNTRFDECGISLQTAKALSSAGYVHMTRIQEASLPICLEGMDALVKAKTGTGKSVAFLLPAVETVLKAMRSNTSRRVPVSPIYVLILCPTRELASQIAAVAKVLLKYHDGIGVQTLVGGIRFKVDQKRLESDPCQILVATPGRLLDHIENKSGISLRLMGLQMLVLDEADHLLDLGFRKDVEKIVDCLPRQRQSLLFSATIPKEVRRVSQLVLKREHKYVDTVGMGCVETPVKQSYLIAPHELQFHLVYHILKEHILQTPDYKVIVFCITGMVTSLMYNLLRQMKMNVREIHSRKPQLYRTRISDEFKESKQLILVSSDVSSRGMNYPDVTLVIQVGIPSDREQYIHRLGRTGREDKEGEGVLLIAPWEEYFLDEIKDLPLQNFPLPNIDPQTKLKIENSMTKIDNEIKEAAYHAWLGYYNSIREIGREKTTIAELANRFSESIGLQRAPALFRKTAIKMGLKDIPGIRIRK	720

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed5g2259	720	PANTHER	RNA HELICASE	219	719	-	-
	Aed5g2259	720	PANTHER	DEAD-BOX ATP-DEPENDENT RNA HELICASE 33-RELATED	32	121	-	-
	Aed5g2259	720	PANTHER	DEAD-BOX ATP-DEPENDENT RNA HELICASE 33-RELATED	219	719	-	-
	Aed5g2259	720	SMART	ultradead3	270	483	IPR014001	-
	Aed5g2259	720	Pfam	Helicase conserved C-terminal domain	499	602	IPR001650	-
	Aed5g2259	720	Gene3D	-	477	706	IPR027417	-
	Aed5g2259	720	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	330	621	IPR027417	-
	Aed5g2259	720	SMART	helicmild6	523	604	IPR001650	-
	Aed5g2259	720	MobiDBLite	consensus disorder prediction	78	94	-	-
	Aed5g2259	720	MobiDBLite	consensus disorder prediction	78	99	-	-
	Aed5g2259	720	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	251	279	IPR014014	GO:0003724
	Aed5g2259	720	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	499	645	IPR001650	-
	Aed5g2259	720	PANTHER	RNA HELICASE	32	121	-	-
	Aed5g2259	720	MobiDBLite	consensus disorder prediction	114	192	-	-
	Aed5g2259	720	Pfam	DEAD/DEAH box helicase	275	455	IPR011545	GO:0003676\|GO:0005524
	Aed5g2259	720	CDD	SF2_C_DEAD	480	613	-	-
	Aed5g2259	720	Gene3D	-	218	468	IPR027417	-
	Aed5g2259	720	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	282	467	IPR014001	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed5g2259	Aed-Chr5	24462709	24467142	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed5g2259	242	629	Eukaryotic Initiation Factors Gene Family	AT3G19760	26.420	9.90e-41	152

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed5g2259	-		-	gmx:100808520	1230.7