Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2246 ATGGACTGGAATTTGAAAGCACCTTCTTGGGATTTGAGTGAAGTGGATGAGGCAAACTTGGGCAACATGGAAGGTTCAAGCAGATATGGGTTGTATAGAACAAAGGGGGAATTTTCTGTTGACTTGAAACTTGGGCAGGTGGGGAATTCTGGCACAGAATCAGTGTTGTTGACTAAGTCCAAAGATGCTGTTGGAGTTGGAGTGTCCAAAATGACATCCTCATTCTCATCATCTTCTAAGAGAGCTCGTGCGCTTAGCAACGGGACACAAACAGTGTCATGCCTTGTTGATGGATGCCACTCTGATCTCAGTAACTGCAGGGACTATCATAGACGCCATAAGGTCTGTGAAGTCCATTCCAAGACTGCACAGGTCACAATTGGAGGCCAGAAACAAAGGTTCTGCCAGCAGTGTAGCAGGTTCCATTCACTGGAGGAATTTGATGAGGGGAAAAGGAGCTGCAGAAAGCGGTTAGACGGGCACAACCGACGGAGAAGAAAGCCCCAAGCAGAACCTCTAACACGGTCTGGTAGTTTTTTGTCCAATTACCAAGTAGAAAATCAATTATTATCAGGCACACAGTTGCTACCTTTCTCGAGTTCACATGTGTACCCATCGACTACTGTGGTGAATCCAACTTGGGGTGGAGTTCTTAGTTCTGGTGACATTAGGCTTCATGGGCACAACCAACAGCAGCAGGACCTTTTTCTTGGATCCGGTTACAAAGAAGGTAAGCAATTGGCATTCATGCAACAAAGTGAGCAGAGCCCACATCTTCTATCAGGTGCTTCGGTGGGCCAGGCCCATATGTTTCTTAGGACTGGGCCGTATTCAGAAAGCGGTGGTGGGCTGAGATACAAAATGTTCTGCGATTCTCTAACAAGTTCGGTCCATGATAACAACAATAATAATAATACCTCTCGTGCTCTCTCTCTTCTGTCATCACCACAGCCACAGCCACAGCCGCACAACCAAATGGTGAACACACACTCACCCCTTATGATGCAACCATTGGGCCTGAGCCTGCATGACAACAACCTGGACCACCAAGTTTTGGGGCCCAATAATGGGGCTGGGAATTCCTCATCATCAATGTATAATAATGGATCACATTCCCAGGGGAATGAGGGCCCTCCACTATTTCCCTTTCAATGGGAATAA 1161 0.4694 MDWNLKAPSWDLSEVDEANLGNMEGSSRYGLYRTKGEFSVDLKLGQVGNSGTESVLLTKSKDAVGVGVSKMTSSFSSSSKRARALSNGTQTVSCLVDGCHSDLSNCRDYHRRHKVCEVHSKTAQVTIGGQKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQAEPLTRSGSFLSNYQVENQLLSGTQLLPFSSSHVYPSTTVVNPTWGGVLSSGDIRLHGHNQQQQDLFLGSGYKEGKQLAFMQQSEQSPHLLSGASVGQAHMFLRTGPYSESGGGLRYKMFCDSLTSSVHDNNNNNNTSRALSLLSSPQPQPQPHNQMVNTHSPLMMQPLGLSLHDNNLDHQVLGPNNGAGNSSSSMYNNGSHSQGNEGPPLFPFQWE 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2246 386 Gene3D - 85 155 IPR036893 GO:0003677|GO:0005634
Aed5g2246 386 ProSiteProfiles Zinc finger SBP-type profile. 91 168 IPR004333 GO:0003677
Aed5g2246 386 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 13A ISOFORM X1 9 386 - -
Aed5g2246 386 MobiDBLite consensus disorder prediction 348 377 - -
Aed5g2246 386 Pfam SBP domain 94 167 IPR004333 GO:0003677
Aed5g2246 386 MobiDBLite consensus disorder prediction 299 335 - -
Aed5g2246 386 SUPERFAMILY SBT domain 92 173 IPR036893 GO:0003677|GO:0005634
Aed5g2246 386 MobiDBLite consensus disorder prediction 299 386 - -
Aed5g2246 386 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 9 386 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2246 Aed-Chr5 24406847 24409263 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2246 1 386 SBP-box Gene Family AT5G50670 42.893 6.13e-73 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Aed5g2246 SBP 2.9e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2246 - - gmx:100806507 534.258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g2246 5 24406847 24409263 Aed10g0793 10 6583621 6587861 PCT