Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2244 ATGGAGAAACATCAAGTGTTGTTCCCTATTTCAACTTCATCATCATCTGATTTTAAACTTGGTCACGATCATGGTCATGTCAAGAAGGCTGCAGCAGGTTGCAATGTGAAGAAACAAATCCAACGCCATTCGAAAGACGAAGAGATTGTGGTAACAACTTATGAAGGGATACATATTCATCATGTGGAGAAGTCAACTGAAAGCTTCGAGCAGATATTGAGAAACCATCCCATATACGGTCTAACTTTATAA 252 0.3889 MEKHQVLFPISTSSSSDFKLGHDHGHVKKAAAGCNVKKQIQRHSKDEEIVVTTYEGIHIHHVEKSTESFEQILRNHPIYGLTL 83
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2244 83 PANTHER WRKY FAMILY TRANSCRIPTION FACTOR 29 79 - -
Aed5g2244 83 Pfam WRKY DNA -binding domain 32 60 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aed5g2244 83 SMART WRKY_cls 22 62 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aed5g2244 83 Gene3D WRKY domain 12 63 IPR036576 GO:0003700|GO:0006355|GO:0043565
Aed5g2244 83 ProSiteProfiles WRKY domain profile. 22 63 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aed5g2244 83 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 29 79 IPR044810 GO:0003700
Aed5g2244 83 SUPERFAMILY WRKY DNA-binding domain 32 62 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2244 Aed-Chr5 24393802 24394491 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2244 32 79 WRKY Transcription Factor Family AT5G13080 64.583 8.87e-17 68.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Aed5g2244 WRKY 6.4e-06 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2244 - - gmx:100127378 99.3673