Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2225 ATGGATGATGGCCGCCAACACGAAAATGGCAGGCATAAGATGGAATACTACAGAGGAGCACATTCCCTGTGGAATACTGATTCCCAGCATCAAGTAAAAGAGCCAAATGCACTAGTTATGAATAAGAAGATTAGGTCTATTATGGCTGAAAGGCAGGCTGCCATTCTAGAAATTGAACTAGATGCTGCTATATCTGAAAAGAATGAAGCCTTGGCTGCTCGAGATGCAGCCATTCGGCAGAGGGATGAAGCGCTTTCTCAGAGGGATAATGCCCTTTTGGAACGAGATAATGCCCTCGCTGCCCTTCAGAGTCGGAACAATTCTGTCAACTTCCCATTTGGCGGGGGAATTCAATGTGGATCAAAAAGGATGCACCATTCTTCAAACCATCTATCTAACATGACTGAAGCTGCATACAGCACAAAGGATATGATAATAAGAGATGCCTCCCCAGTGACTGTTATACCTTCTGAAGCTGTCAAATCTCATCAAGTAAAGAGAACAAAGGAGAACAAGTTAATTGATTCTAAGGCATCAAAGCCATCCTGCAAAGTAAAGAAAATGGGTGAGGATTTAAATAGGCAGGCTTCTTCTGAAGGGACAAAGATCAGATCTGAATGGGATAGGCAGGATGTTGGCCTGAATTTGGTTGCATTTGATGAAACTATCATGCTGGTCCCAGTTTGTACATGTACCGGTGTAGCACGACAGTGCTACAAATGGGGAAATGGCGGATGGCAGTCATCTTGTTGTACCACAACATTGTCTATGTATCCGTTACCGCAGCTTCCGAACAAGCGCCATGCCCGCATTGGGGGACGAAAGATGAGTGGAAGTGTCTTCACAAGACTTCTCAGTAGGTTGGTGTCAGAAGGCCATGATTTATCTATACCACTGGATCTTAAGGAATACTGGGCCAGACATGGAACCAACCGCTACATTACAATCAAGTAA 954 0.4444 MDDGRQHENGRHKMEYYRGAHSLWNTDSQHQVKEPNALVMNKKIRSIMAERQAAILEIELDAAISEKNEALAARDAAIRQRDEALSQRDNALLERDNALAALQSRNNSVNFPFGGGIQCGSKRMHHSSNHLSNMTEAAYSTKDMIIRDASPVTVIPSEAVKSHQVKRTKENKLIDSKASKPSCKVKKMGEDLNRQASSEGTKIRSEWDRQDVGLNLVAFDETIMLVPVCTCTGVARQCYKWGNGGWQSSCCTTTLSMYPLPQLPNKRHARIGGRKMSGSVFTRLLSRLVSEGHDLSIPLDLKEYWARHGTNRYITIK 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2225 317 Coils Coil 53 73 - -
Aed5g2225 317 PANTHER - 1 317 IPR010409 -
Aed5g2225 317 PANTHER PROTEIN BASIC PENTACYSTEINE4 1 317 - -
Aed5g2225 317 Pfam GAGA binding protein-like family 1 317 IPR010409 -
Aed5g2225 317 SMART GAGA_bind_2 1 317 IPR010409 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2225 Aed-Chr5 24276140 24277986 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2225 1 317 BBR or BPC Transcription factor family AT2G21240 58.307 1.16e-127 364
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Aed5g2225 GAGA_bind 5.2e-98 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2225 - - gmx:100813103 621.313