Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2223 ATGGCAGCTTTTTCATCACAATACCACCACCATCCCTTTCTGGTTGACTCCGCATGCTGCTTCTCAGTTACTACTCCTCCCATAATTAAGAACAACGTCGTGTCTTCTCAATCCCTTATAAACAACTCTACTCCTTCTATTTCTCCTCAGTATAATCTTCACAATAATAATAATAGTAATATTCATCACGAAGAAACGTCTTATAGTGACACTGAGCTTTCTGTGGTTAAAAACCATAGTCCCGAGACTTCCATTGTAGTGGACAAGCTTGAAAAAGGTGAACAAGTCACTCAGAAGGTCACCCCCATGGAGAAGAAGAGAAGACCAAGACCAAGAAAAGGTTATTCCTTGAGTAACCCTTTATCAAAGGACACAGCAGCAGGGGGAAACAAGAAACAAAAGAAGATAAACGGTGGGGTGAAAGGAGAAAAGAAGCCAAAAGAAGTGAAGAAGGATCAGAATGAAGACCCTCCAACTGGGTATATCCACGTTAGAGCTAGAAGGGGTCAAGCAACAGATAGCCACAGCCTTGCTGAAAGGGTGAGAAGAGAGAAAATAAGTGAAAGGATGAAGACGTTGCAGCGACTTGTGCCAGGCTGTGATAAGGTAACCGGAAAAGCCCTTGTGTTGGACGAAATAATCAATTATGTCCAGTCTTTACAGAATCAAGTTGAGTTCTTGTCAATGAAACTTGCTTCCGTGAATCCCATGTTCTTTGACTTGGCCATGGACTTAGACACCCTCATGGTTAGACCCGATCATCAGAAATTAAATAATAATATAGCATCACCATCACCATCACCATGTGTAGCACAATTCAAACCGAACCAAGCCATTGCTTTTGCTGACACAACCACCACCACCACCAGCTTCCCCACAGGCACAGCTAATAATGATGATGACTATCTTTTGGATTATTCATCCTCACTTTTTCCTCAAGGCCAGAGGCCAAATCTCTTCTTTGAGTATAACGGTGGTCAGTTTTTGGACATAGAAGACCAACGACAAAAGTTTCTTCATCCTTATGGATTCGGCAATAATTCGGGTTCTTTCAATTAA 1059 0.4193 MAAFSSQYHHHPFLVDSACCFSVTTPPIIKNNVVSSQSLINNSTPSISPQYNLHNNNNSNIHHEETSYSDTELSVVKNHSPETSIVVDKLEKGEQVTQKVTPMEKKRRPRPRKGYSLSNPLSKDTAAGGNKKQKKINGGVKGEKKPKEVKKDQNEDPPTGYIHVRARRGQATDSHSLAERVRREKISERMKTLQRLVPGCDKVTGKALVLDEIINYVQSLQNQVEFLSMKLASVNPMFFDLAMDLDTLMVRPDHQKLNNNIASPSPSPCVAQFKPNQAIAFADTTTTTTSFPTGTANNDDDYLLDYSSSLFPQGQRPNLFFEYNGGQFLDIEDQRQKFLHPYGFGNNSGSFN 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2223 352 MobiDBLite consensus disorder prediction 88 104 - -
Aed5g2223 352 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 168 237 IPR036638 GO:0046983
Aed5g2223 352 CDD bHLH_AtBPE_like 160 236 - -
Aed5g2223 352 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 352 IPR024097 GO:0006355
Aed5g2223 352 PANTHER BASIC HELIX LOOP HELIX PROTEIN BHLH8 1 352 - -
Aed5g2223 352 SMART finulus 176 226 IPR011598 GO:0046983
Aed5g2223 352 MobiDBLite consensus disorder prediction 136 161 - -
Aed5g2223 352 MobiDBLite consensus disorder prediction 88 161 - -
Aed5g2223 352 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 170 220 IPR011598 GO:0046983
Aed5g2223 352 Pfam Helix-loop-helix DNA-binding domain 174 221 IPR011598 GO:0046983
Aed5g2223 352 Gene3D - 167 238 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2223 Aed-Chr5 24258334 24260555 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2223 117 253 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 63.380 5.04e-54 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aed5g2223 HLH 3.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2223 - - gmx:100777509 426.017
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g2223 5 24258334 24260555 Aed5g2223 5 24258334 24260555 ECH