Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2215 ATGTCTGGTTGGATGATGCAAGACACAGACACAGTAGAAGAACAAAACCCTGGTTCTGCTTGTGCTTACAAACCCATAATCTCGGCGGAGATCCACGAAGATGAAGAATGGGCGCACGTGTCCAACAGCAACAACATGAGCTTCACCACCAACGTTAATGTTAATGATAATTATTTACTTCAACAACATGAGCATGGTTTTGAAGTCATGGGGGGTTCCGATGTGGGATTTCTTGACCCTCATGTCTTGTTCAGCTCAAGCACGTGTGTAGAATCAGCTGCTAGTGCACACCCAACACTTTTTCAAAAGAGAGCAGCGGCGCTTAGGAAAAACTTGCCCGTGCCAGTGCCAGTGCCAGTGCCTCATCATCATAACTGCAAAGCCAAGACTACTGAACCTGTACTCGTAATTGATAGCAGTAAGAAGAGGATGAAAACGTGTAATAATTATATTATTGGAGGAGGAGGAGGAGGAGAAGCAAGTGGGAGTAGTTTTGATGATGAGATATTCAGCGATGACAATTATAAGATGGAATTAGATGAGAGTGCAGCAAGAAACGGTGGCAAGAAGAAGACGGGAACACCCGCTAAGAATTTGATGGCTGAACGGCGCCGAAGGAAGAAGCTCAATGATAGACTCTACATGCTCAGATCCGTTGTTCCCAATATTACCAAAATGGACAGGGCATCAATCCTTGGGGATGCAGTGGAGTATTTGAAGGAACTTCTGCAAAGGATCAGTGAGCTTCACAATGAATTGGAGTCAACAGCAGGGCGTGTGCAATTAGAAGAACTTTGTCTCAGCAACTCGTTGCCAAGCCCTAATAATACCCAACCTGCTCCTGCTAGGGTTGAGGTTGGGTTGCGCGAAGGAAGAGGTGTAAACATCCACATGTTTTGCGACCGGAAACCCGGTCTCTTGCTCTCTACCATGACGGCTCTCGACAACCTTGGACTAGATATTCACCACGCAGTTATCAGCTATATCAATGGATTTGCTATGGATATTTTCAGAGCTCAGCAACGCAACGAAGGTCAGGATGTCCATCCGGAGCAAATCAAAGCAGTTTTGTTGGATTCAGCTGGATTCCATAGCATGAACTAA 1104 0.4565 MSGWMMQDTDTVEEQNPGSACAYKPIISAEIHEDEEWAHVSNSNNMSFTTNVNVNDNYLLQQHEHGFEVMGGSDVGFLDPHVLFSSSTCVESAASAHPTLFQKRAAALRKNLPVPVPVPVPHHHNCKAKTTEPVLVIDSSKKRMKTCNNYIIGGGGGGEASGSSFDDEIFSDDNYKMELDESAARNGGKKKTGTPAKNLMAERRRRKKLNDRLYMLRSVVPNITKMDRASILGDAVEYLKELLQRISELHNELESTAGRVQLEELCLSNSLPSPNNTQPAPARVEVGLREGRGVNIHMFCDRKPGLLLSTMTALDNLGLDIHHAVISYINGFAMDIFRAQQRNEGQDVHPEQIKAVLLDSAGFHSMN 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2215 367 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 45 366 - -
Aed5g2215 367 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 196 261 IPR036638 GO:0046983
Aed5g2215 367 SUPERFAMILY ACT-like 294 364 IPR045865 -
Aed5g2215 367 Coils Coil 239 259 - -
Aed5g2215 367 Pfam Helix-loop-helix DNA-binding domain 200 242 IPR011598 GO:0046983
Aed5g2215 367 Gene3D - 188 257 IPR036638 GO:0046983
Aed5g2215 367 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 193 242 IPR011598 GO:0046983
Aed5g2215 367 SMART finulus 199 248 IPR011598 GO:0046983
Aed5g2215 367 PANTHER BHLH TRANSCRIPTIONAL FACTOR 45 366 - -
Aed5g2215 367 CDD bHLH_AtAMS_like 196 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2215 Aed-Chr5 24202238 24204016 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2215 195 340 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 67.857 1.10e-65 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aed5g2215 HLH 2.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2215 - - gmx:100217334 336.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g0769 10 6315420 6318993 Aed5g2215 5 24202238 24204016 ECH
Aed5g2215 5 24202238 24204016 Aed5g2215 5 24202238 24204016 ECH
Aed5g2215 5 24202238 24204016 Aed10g0769 10 6315420 6318993 PCT