Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2214 ATGGCAACGTCGGAGGTATCGATCAAGGCAAATTCGGTGAACGGAAATGGAGATAACACTGCTTGTGGCTACAACAACGCTGGCGGAGAGCCTCAGAATGCTTCTACATCATCATCCGCGAAAGACGCGGAAGCTGCGCTATACAGGGAGCTTTGGCACGCGTGTGCGGGTCCTCTGGTGACGGTGCCTAGAGAAAGAGAGCGCGTGTTCTACTTTCCTCAAGGACATATCGAGCAGGTGGAAGCGTCCACAAATCAGGTAGCGGAACAGCATATGCCGGTTTACGATCTACCACCCAAGATCCTCTGTCGGGTCATCAACGTCATGCTCAAGGCGGAGCCAGACACGGATGAGGTCTTTGCTCAAGTCACTTTACTTCCCGAGCCAAATCAAGATGAGAATGCGGTGGAGAAAGAGGGTCCACCGGCGCCACCTCCTCGCTTTCACGTTCATTCCTTTTGTAAAACGCTGACGGCGTCTGATACCAGTACTCACGGTGGCTTTTCGGTGCTTAGACGACATGCCGATGAATGCCTCCCTCCGCTGGACATGTCAAAGCAGCCACCTACCCAGGAGTTGGTGGCCAAGGATCTGCACGCTAACGAGTGGCGATTCAGGCATATTTTCCGGGCAATGTGGTCAAATTCGTTTTACAGGACTAGTCCAGCTGAGTTTATTGTTCCCTATGATCAATACATGGAGTCTCTTAAAAGCAGCTATACCATTGGGATGCGGTTCAAAATGAGGTTTGAAGGTGAAGAGGCTCCGGAGCAAAGGTTTACTGGTACCATTGTTGGAATCGAAGATGCTGATACCAAAAGGTGGCCAAAGTCCAAATGGAGAAGTCTTAAGGTGGCATTCTGGCTTTTATGTCACTCGTGTGTGTGTGTCTGTTGA 897 0.5072 MATSEVSIKANSVNGNGDNTACGYNNAGGEPQNASTSSSAKDAEAALYRELWHACAGPLVTVPRERERVFYFPQGHIEQVEASTNQVAEQHMPVYDLPPKILCRVINVMLKAEPDTDEVFAQVTLLPEPNQDENAVEKEGPPAPPPRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSKQPPTQELVAKDLHANEWRFRHIFRAMWSNSFYRTSPAEFIVPYDQYMESLKSSYTIGMRFKMRFEGEEAPEQRFTGTIVGIEDADTKRWPKSKWRSLKVAFWLLCHSCVCVC 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2214 298 Gene3D - 150 231 IPR015300 -
Aed5g2214 298 SUPERFAMILY DNA-binding pseudobarrel domain 149 212 IPR015300 -
Aed5g2214 298 Pfam Auxin response factor 219 284 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Aed5g2214 298 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 32 210 IPR044835 GO:0003677|GO:0006355|GO:0009725
Aed5g2214 298 Gene3D - 239 288 - -
Aed5g2214 298 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 219 286 IPR044835 GO:0003677|GO:0006355|GO:0009725
Aed5g2214 298 PANTHER AUXIN RESPONSE FACTOR 2 32 210 - -
Aed5g2214 298 PANTHER AUXIN RESPONSE FACTOR 2 219 286 - -
Aed5g2214 298 CDD B3_DNA 151 218 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2214 Aed-Chr5 24196571 24201268 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2214 219 285 B3 DNA Binding Superfamily AT5G62000 85.075 6.63e-34 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2214 - - gmx:100780892 407.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g2214 5 24196571 24201268 Aed5g2214 5 24196571 24201268 ECH
Aed5g2214 5 24196571 24201268 Aed10g0768 10 6310030 6315030 PCT