Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2213 ATGAATCGTGTGAATGGTTGTGGATGCAGCTCCAGTGTTTGGAGGAAGGTGCTGAATCGTTGCGCGCCAGATGCAGCAAGTTCTACAAAGGATGTCGAAAGTATTCGTTTTGGATTTGCGAGTAAAAATATGCTTGAACAAGGTGGTTGCACAAGGGAAGGTCTTGGAGAGGCATATGATGGGGACATTGCATTTGCAAGTGCCATAGAAAATTTTGGAGGAGGGCACAATGATCCTCATTTTGTTGCTTTGGGAGGACCTGTTATGGCCAAATTTACTATAGCATTGAGAGAAATCAGTACGTACAAGGAACTGCTCCGGTCACAAGTAGAGCACATTTTCAATGACAGGCTACAACCAATTGTCAATATTGAAATCAATGAAGTCAAGGCACGGGAAAAGTTTATGTCACTGAAAAAAAGCACTAAGATTGACGTTGCCACTGTCATAGAAGAGGAATTGCAGGATGCAAGAGCATCATTTGAGGAAGCCCGTTTCAGTCTGGTTGGCACTCTTAATGACATTGAGGTCAAGAAGAGATTCGAGTTTTTAGAGGCCATAACTGGAATTATGGATGCTCATCTTCGATACTTTCAACAGGGGTATCACCTATTGAATCAGATGGAACCTTTCATTAGTGAGATTATGGATTATGTACATCAGTCAAGAGAAAGATACAATCAGGAGCAGATTTCACTTTATAAAAGAATGCAAGACTACAAAAAACAAGTTTATGAAGAAAGTAGGTTGTCTTTAAATGGTCCTTATGGTTCTCCTTGTGGAGACTCTGCGCATCCGTTTTCTAGGATATCAAATGAAGTGGCAGATGTAGTAATGGAATCCGCTGCAAATGGAAAGGTTCAAATCATTCGACAAGGATATCTTTCTAAACGATCCTCCAATTTGAGAGGTGACTGGAAAAGAAGGTATTTTGTTCTTGACAGTCGAGGAATGTTGTACTACTACCGCAAACCATGGAGCGGGTCACATGGCAGCAATCAACTATCTCCAAAGAGGAATAATGGCACCGAAAATGGTTCTGGGATTCTGAGTCGATGGCTTTCTTCTCATTACCATGGGGGTGTACATGATGAAAGATCTGTTGCACGTCATACAGTAAACCTGCTGACATCAACAATCAAGGCTGATGCTGATCAGTCAGATTTAAGATTCTGCTTCAGGATTATTTCGCCATCCAAGAACTATACGTTGCAGGTACTTGTTCCAAAACTTTATCAGTTTATAGTTTGGGCATTTATTGTTACTTATAACTACACTGAGGAAGCAATGCAGGCAGAAAATGCAGTGGATCAGATGGATTGGATGGAAAAGATAAATGGAGTAATTGCCTCCTTGTTGAGTGTCCAGACACTGGGAATGCCTCTCTCAGCTGACTCAGAAAACGGCAACTCTCACTCTGATGACAATATTGATAACTTAGAAAGTTCTCCTGATGATCATCACACTGTGACTGTGAAATCTGCCTCCAAGAATTCCACCCCTAATAACCAGTTACGTTCATCTAGAAGTATGCAGTTTCATAAACACAGCATGAGAATTGAAAAACCAATTGATGTTCTTAGAAGGGTAAGTGGGAATGACAAATGTGCTGATTGCGGTAAACCTGAACCAGAATGGGCATCCATAAACCTTGGCATCCTTATATGCATTGAGTGTTCTGGTGTTCATCGTAATCTTGGTGTACATATATCAAAAGTAAGATCACTGAGACTTGATGTTAAAGTCTGGGATCCCTCTGTTTTAAGTATGCTTAAGTCACTAGGCAATCTTTTTGCAAACTCAGTTTGGGAAGAGCTGCTGCATTCACCCAGTAATTTGCTAACTGATGACACCCCTTCTTGTTCATCCAAGGAAAATGGAGAGGTGCTATTTCATGCAAGAAAACCAAAACATGATGATTCTATTTCATTAAAGGAAAGGTTCATTCATGCAAAGTATTCTGAGAAAATATTTATTCCCCGGACAAAGAAAGACCACCCTCTCTTTTCTCCGGCACAACTGGTGCAGGAAAGCATCTGTGCCAATGATAAGAAAGCAGTCTACCAGCATATTGTGAAGTTGGATTTTGACGTCAAAGCCATCGGTTGGCAAGCATCATCTGATGACTCTCTCAACATGACTTCTTCAAACATTGCATCTCAAAGTGAAAATCAGCCCATTGAGGGCATACAAGATGGTTCTAGCGTGCTTCACCTGGCATGCCTAACTAGTGACGTTGGCATGGTGGAGCTGCTCCTACAATATGGGGCAGACATAAATGCTTGTGATTCTAGAGGTCGGACACCACTACATTATTGTATTATTAAAGCGAGGACGGCAGCTGCAAAAGTGCTTATCATGAGGGGAGCCAATACATATGTTGCAGATAAAGAAGGCAACACTCCTGTTAAGCTTGCATCAGAATCCGGCTGTGTTGTTAATAAGGAAATTGTCGCTCTCTTGGCAAGCAGATGA 2475 0.4141 MNRVNGCGCSSSVWRKVLNRCAPDAASSTKDVESIRFGFASKNMLEQGGCTREGLGEAYDGDIAFASAIENFGGGHNDPHFVALGGPVMAKFTIALREISTYKELLRSQVEHIFNDRLQPIVNIEINEVKAREKFMSLKKSTKIDVATVIEEELQDARASFEEARFSLVGTLNDIEVKKRFEFLEAITGIMDAHLRYFQQGYHLLNQMEPFISEIMDYVHQSRERYNQEQISLYKRMQDYKKQVYEESRLSLNGPYGSPCGDSAHPFSRISNEVADVVMESAANGKVQIIRQGYLSKRSSNLRGDWKRRYFVLDSRGMLYYYRKPWSGSHGSNQLSPKRNNGTENGSGILSRWLSSHYHGGVHDERSVARHTVNLLTSTIKADADQSDLRFCFRIISPSKNYTLQVLVPKLYQFIVWAFIVTYNYTEEAMQAENAVDQMDWMEKINGVIASLLSVQTLGMPLSADSENGNSHSDDNIDNLESSPDDHHTVTVKSASKNSTPNNQLRSSRSMQFHKHSMRIEKPIDVLRRVSGNDKCADCGKPEPEWASINLGILICIECSGVHRNLGVHISKVRSLRLDVKVWDPSVLSMLKSLGNLFANSVWEELLHSPSNLLTDDTPSCSSKENGEVLFHARKPKHDDSISLKERFIHAKYSEKIFIPRTKKDHPLFSPAQLVQESICANDKKAVYQHIVKLDFDVKAIGWQASSDDSLNMTSSNIASQSENQPIEGIQDGSSVLHLACLTSDVGMVELLLQYGADINACDSRGRTPLHYCIIKARTAAAKVLIMRGANTYVADKEGNTPVKLASESGCVVNKEIVALLASR 824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2213 824 ProSiteProfiles PH domain profile. 288 450 IPR001849 -
Aed5g2213 824 Pfam BAR domain of APPL family 89 229 - -
Aed5g2213 824 PANTHER CENTAURIN/ARF 50 406 IPR045258 GO:0005096
Aed5g2213 824 MobiDBLite consensus disorder prediction 493 511 - -
Aed5g2213 824 PRINTS HIV Rev interacting protein signature 575 596 IPR001164 GO:0005096
Aed5g2213 824 PRINTS HIV Rev interacting protein signature 552 569 IPR001164 GO:0005096
Aed5g2213 824 PRINTS HIV Rev interacting protein signature 533 552 IPR001164 GO:0005096
Aed5g2213 824 ProSiteProfiles Ankyrin repeat region circular profile. 765 797 - -
Aed5g2213 824 MobiDBLite consensus disorder prediction 463 512 - -
Aed5g2213 824 Gene3D Arfaptin homology (AH) domain/BAR domain 36 246 IPR027267 -
Aed5g2213 824 CDD ArfGap 524 653 - -
Aed5g2213 824 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD10 424 824 - -
Aed5g2213 824 ProSiteProfiles Ankyrin repeat profile. 765 797 IPR002110 GO:0005515
Aed5g2213 824 Gene3D - 281 458 IPR011993 -
Aed5g2213 824 ProSiteProfiles ARF GTPase-activating proteins domain profile. 521 666 IPR001164 GO:0005096
Aed5g2213 824 MobiDBLite consensus disorder prediction 471 492 - -
Aed5g2213 824 SMART arf_gap_3 521 666 IPR001164 GO:0005096
Aed5g2213 824 Gene3D Arf GTPase activating protein 501 667 IPR038508 -
Aed5g2213 824 ProSiteProfiles Ankyrin repeat profile. 732 764 IPR002110 GO:0005515
Aed5g2213 824 Pfam Putative GTPase activating protein for Arf 524 659 IPR001164 GO:0005096
Aed5g2213 824 CDD PH_ACAP 291 454 - -
Aed5g2213 824 Gene3D - 704 824 IPR036770 -
Aed5g2213 824 SUPERFAMILY Ankyrin repeat 701 824 IPR036770 -
Aed5g2213 824 Pfam PH domain 290 449 IPR001849 -
Aed5g2213 824 SUPERFAMILY BAR/IMD domain-like 54 311 IPR027267 -
Aed5g2213 824 Pfam Ankyrin repeats (many copies) 734 786 IPR002110 GO:0005515
Aed5g2213 824 SUPERFAMILY PH domain-like 199 449 - -
Aed5g2213 824 ProSiteProfiles Ankyrin repeat region circular profile. 732 763 - -
Aed5g2213 824 PANTHER CENTAURIN/ARF 424 824 IPR045258 GO:0005096
Aed5g2213 824 SMART PH_update 289 452 IPR001849 -
Aed5g2213 824 SUPERFAMILY ArfGap/RecO-like zinc finger 520 660 IPR037278 -
Aed5g2213 824 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD10 50 406 - -
Aed5g2213 824 SMART ANK_2a 732 761 IPR002110 GO:0005515
Aed5g2213 824 SMART ANK_2a 765 794 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2213 Aed-Chr5 24168856 24181078 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2213 522 659 C2H2 Transcription Factor Family AT4G21160 40.690 9.16e-21 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2213 K12489 - gmx:100792517 1284.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g0766 10 6285370 6292304 Aed5g2213 5 24168856 24181078 ECH
Aed5g2213 5 24168856 24181078 Aed5g2213 5 24168856 24181078 ECH
Aed5g2213 5 24168856 24181078 Aed10g0766 10 6285370 6292304 PCT