Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2209 ATGCCTTTTCAAATCATGGATCAGAGGGGTGTTTCGTCTTCATCCCACTTCTTTGATGACATTTCCTTTCGTTCTGAGAGGAATGTTGGATTACGGAAACCAAAATCCATTAATGGCCATTACCCACACGGAAACAATGGAATGGTAGCATCACCTAGCAGCATTTTGAATGGTACATCACCCCTTGATGTAAATGCAAAAGCTGGCTTACTGGTGCCACAGGCTAGTCTACCTGGGGATAGTATGGATTCCAAGGAATCATCGAATTATCGTCCCAAATCATTGTCTGATGCATGTCTGCAGTCAGCACCTACCTCTTATGGTTTAATTGGGAACAGGATTGTGACCAATGCTGCCCCTTGTGAAAGTAGTTTATTCTCAAGTTCCATGTCTGAGATATTTAGCCGAAAGTTAAGGTTATTCGGGAATAATGTTCTGTCTGATCATCCCATTACTGCTGGTTCTCCTCCCGAGGAAGAGCCTTATAAATCTCTTGAGGAAATGGAGGCTGACACTATAGGGAATCTCCTTCCTGATGAAGATGATCTGTTTAATGGTGTTGTGGATGAGTTAGGATGCGGCTCTCATGCTAGAGCAAATGATGATTTTGAAGATTTTGACCTGTTTAGCAGTGGTGGAGGCATGGAGATGGAAGGAGATGAACATTTAAGTTCAGGAAAAAGAATGACTGGTCTTGATGGAGATTTTGGTTTCTTTGGAGGTTCTAAAGGAAAACTTCCTTTTGTTGAACAGCCTTCTAGAACACTTTTTGTTAGAAACATTAATAGCAATGTAGAAGACTCTGAACTAAAGGCTCTCTTTGAGCAATATGGAGATATTCGAACCATTTATACAGCCAGTAAGCATCGTGGGTTTGTCATGATTTCTTATCATGATCTAAGGGCAGCACAAAATGCAATGCAAGCACTTCAAAATAGACCATTGAGGTCTAGGAATCTTGATATACATTATTCAATTCCAAAGGTCAATGCTCCAGAAAAGGATATTGGTCATGGTACACTGATGCTATCTGGTCTTGATTCACCTGTTTTAAATGATGAGCTTAAACAAACTTTTGAATTTTATGGAGAAATTAAAGAAATCAATGAATATCCAGAAATGAATAGTCACAAATTTATTGAGTTTTATGATGTCCGAGCTGCGGAAGCCGCTCTTCGTGCATTGAACAAGATTGACATTGCTGGGAAGCAGATCAAGCTTGAACCTGGCCATCCTAGTTTGATGCACCAGTCTCAAAAGGGGCAAGAGGAGCGAGATCTTGGTCAAAGTATTATTGACAACTTATCATTAAGACAAAAAGTGCCTTCTGGAGTAATTGGATCTGGTTGCTTAGAAAATGGATATAATCAGAGATTTCAATCTACAGTTCGGCAGCCTTTGAATGCATTTATGGATAATGCATTCGTTCATGGGAATTCTGGTATTCACAACACTGTGAGAGGAACACCGGCGGGAAAAGTGTCCAGTGTTTGTGAGCCGAGTAGCTTTGTTGATGCAATGAAATTGGCATCTGGTTCAAGATTTCAACCCCATTCCTTACCTGAGTATCGTGATAGTTTAGCTAATGGTAGTCCTTATAACTTTTCTAGCTCCATTAGCAACATGACTAACAATATAGGTGCTGGAGCAACAGAAGCCTCTAATGGCAGGCATATTCAGGGAATGGCCTCAACTGGGAATTTAGCAGAATTTAATGCGGGAGGAAATGGGATACGCCCACATCATGGACTTTATCATATGTGGAACAGCTCCAATTTGCAACAGCAACCTTCATCAAGTACCATGCTTTGGCAGAAATCACCTTCATTTGTTAACGATGCTGGTTCTCCGAGCCTTCCACAGATGTCAAGCTTTGCTAGAACACCACCTCATATGCTGAGAACACCACATTTGATGGACCATCATGTTGGATCAGCACCAGTTGTTACAGCCTCACCCTGGGAAAGGCAAAATTCTTACTTGGGAGGGTCCCCTGAGGCTTCTGGTTTTCGCTTGGGTTCTCTAGGGAGTGGAGGTTTTCATGGTTCCTGGCAAATGCATCCACTGGATTTTCCTTCTCACAACATGTTTTCTCATGTTGGTGGGACTGGCACTGAACTGACGTCCAATGCTGGACAGAACTCTCCTAAGCAGTTATCTCATATTTTCCCTGTGAGACATCCTCTGTCTTCAATGTCAAAGTTTGATGCTACCAATGAACGTATGAGAAACCTTTATCACCGTAGAAGTGAAGCAAGCACCAACAATGCTGATAAAAAACAGTATGAACTTGACTTAGGTCGCATTTTGCGTGGGGAAGACAGCCGAACTACACTTATGATAAAAAATATTCCCAACAAGTATACTTCAAAGATGCTTCTTGCTGCAATAGACGAGCAATGTAAAGGAACTTATGATTTTCTGTATTTACCGATTGATTTCAAGAACAAATGTAATGTTGGGTATGCTTTCATAAACATGACTGATCCTGGCCAAATTGTTCCTTTCCACCAGGAGCCTTTCCCCATGGGTGCCAATATTAGACTGAGACCTGGAAAATCTCGCGCTGTTGGCAATGAGGAGAATCGAAGCCTAGGGAGCCCTTCAACTATGGCAAGTGGAGAAGAGTCTGCTAATGGGATAGACTCTTCAAAAAACTCTGATCTAGCCTTCCTTGGGCACTAA 2685 0.4175 MPFQIMDQRGVSSSSHFFDDISFRSERNVGLRKPKSINGHYPHGNNGMVASPSSILNGTSPLDVNAKAGLLVPQASLPGDSMDSKESSNYRPKSLSDACLQSAPTSYGLIGNRIVTNAAPCESSLFSSSMSEIFSRKLRLFGNNVLSDHPITAGSPPEEEPYKSLEEMEADTIGNLLPDEDDLFNGVVDELGCGSHARANDDFEDFDLFSSGGGMEMEGDEHLSSGKRMTGLDGDFGFFGGSKGKLPFVEQPSRTLFVRNINSNVEDSELKALFEQYGDIRTIYTASKHRGFVMISYHDLRAAQNAMQALQNRPLRSRNLDIHYSIPKVNAPEKDIGHGTLMLSGLDSPVLNDELKQTFEFYGEIKEINEYPEMNSHKFIEFYDVRAAEAALRALNKIDIAGKQIKLEPGHPSLMHQSQKGQEERDLGQSIIDNLSLRQKVPSGVIGSGCLENGYNQRFQSTVRQPLNAFMDNAFVHGNSGIHNTVRGTPAGKVSSVCEPSSFVDAMKLASGSRFQPHSLPEYRDSLANGSPYNFSSSISNMTNNIGAGATEASNGRHIQGMASTGNLAEFNAGGNGIRPHHGLYHMWNSSNLQQQPSSSTMLWQKSPSFVNDAGSPSLPQMSSFARTPPHMLRTPHLMDHHVGSAPVVTASPWERQNSYLGGSPEASGFRLGSLGSGGFHGSWQMHPLDFPSHNMFSHVGGTGTELTSNAGQNSPKQLSHIFPVRHPLSSMSKFDATNERMRNLYHRRSEASTNNADKKQYELDLGRILRGEDSRTTLMIKNIPNKYTSKMLLAAIDEQCKGTYDFLYLPIDFKNKCNVGYAFINMTDPGQIVPFHQEPFPMGANIRLRPGKSRAVGNEENRSLGSPSTMASGEESANGIDSSKNSDLAFLGH 894
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2209 894 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 339 412 IPR000504 GO:0003723
Aed5g2209 894 PANTHER RNA RECOGNITION MOTIF-CONTAINING 839 882 - -
Aed5g2209 894 MobiDBLite consensus disorder prediction 860 886 - -
Aed5g2209 894 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 254 327 IPR000504 GO:0003723
Aed5g2209 894 PANTHER RNA RECOGNITION MOTIF 2, NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 839 882 - -
Aed5g2209 894 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 341 406 IPR000504 GO:0003723
Aed5g2209 894 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 256 320 IPR000504 GO:0003723
Aed5g2209 894 CDD RRM1_MEI2_like 253 328 IPR034453 -
Aed5g2209 894 Gene3D - 337 433 IPR012677 -
Aed5g2209 894 PANTHER RNA RECOGNITION MOTIF-CONTAINING 2 838 - -
Aed5g2209 894 PANTHER RNA RECOGNITION MOTIF 2, NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 2 838 - -
Aed5g2209 894 MobiDBLite consensus disorder prediction 855 894 - -
Aed5g2209 894 SUPERFAMILY RNA-binding domain, RBD 778 839 IPR035979 GO:0003676
Aed5g2209 894 SUPERFAMILY RNA-binding domain, RBD 251 409 IPR035979 GO:0003676
Aed5g2209 894 SMART rrm1_1 340 408 IPR000504 GO:0003723
Aed5g2209 894 SMART rrm1_1 255 323 IPR000504 GO:0003723
Aed5g2209 894 SMART rrm1_1 778 852 IPR000504 GO:0003723
Aed5g2209 894 Gene3D - 248 336 IPR012677 -
Aed5g2209 894 Pfam RNA recognition motif 2 776 838 IPR007201 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2209 Aed-Chr5 24144239 24152306 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2209 252 405 Eukaryotic Initiation Factors Gene Family AT1G71770 24.691 4.72e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2209 - - gmx:100797893 1536.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g0763 10 6249078 6257523 Aed5g2209 5 24144239 24152306 ECH
Aed5g2209 5 24144239 24152306 Aed5g2209 5 24144239 24152306 ECH