Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Aed5g2209 | ATGCCTTTTCAAATCATGGATCAGAGGGGTGTTTCGTCTTCATCCCACTTCTTTGATGACATTTCCTTTCGTTCTGAGAGGAATGTTGGATTACGGAAACCAAAATCCATTAATGGCCATTACCCACACGGAAACAATGGAATGGTAGCATCACCTAGCAGCATTTTGAATGGTACATCACCCCTTGATGTAAATGCAAAAGCTGGCTTACTGGTGCCACAGGCTAGTCTACCTGGGGATAGTATGGATTCCAAGGAATCATCGAATTATCGTCCCAAATCATTGTCTGATGCATGTCTGCAGTCAGCACCTACCTCTTATGGTTTAATTGGGAACAGGATTGTGACCAATGCTGCCCCTTGTGAAAGTAGTTTATTCTCAAGTTCCATGTCTGAGATATTTAGCCGAAAGTTAAGGTTATTCGGGAATAATGTTCTGTCTGATCATCCCATTACTGCTGGTTCTCCTCCCGAGGAAGAGCCTTATAAATCTCTTGAGGAAATGGAGGCTGACACTATAGGGAATCTCCTTCCTGATGAAGATGATCTGTTTAATGGTGTTGTGGATGAGTTAGGATGCGGCTCTCATGCTAGAGCAAATGATGATTTTGAAGATTTTGACCTGTTTAGCAGTGGTGGAGGCATGGAGATGGAAGGAGATGAACATTTAAGTTCAGGAAAAAGAATGACTGGTCTTGATGGAGATTTTGGTTTCTTTGGAGGTTCTAAAGGAAAACTTCCTTTTGTTGAACAGCCTTCTAGAACACTTTTTGTTAGAAACATTAATAGCAATGTAGAAGACTCTGAACTAAAGGCTCTCTTTGAGCAATATGGAGATATTCGAACCATTTATACAGCCAGTAAGCATCGTGGGTTTGTCATGATTTCTTATCATGATCTAAGGGCAGCACAAAATGCAATGCAAGCACTTCAAAATAGACCATTGAGGTCTAGGAATCTTGATATACATTATTCAATTCCAAAGGTCAATGCTCCAGAAAAGGATATTGGTCATGGTACACTGATGCTATCTGGTCTTGATTCACCTGTTTTAAATGATGAGCTTAAACAAACTTTTGAATTTTATGGAGAAATTAAAGAAATCAATGAATATCCAGAAATGAATAGTCACAAATTTATTGAGTTTTATGATGTCCGAGCTGCGGAAGCCGCTCTTCGTGCATTGAACAAGATTGACATTGCTGGGAAGCAGATCAAGCTTGAACCTGGCCATCCTAGTTTGATGCACCAGTCTCAAAAGGGGCAAGAGGAGCGAGATCTTGGTCAAAGTATTATTGACAACTTATCATTAAGACAAAAAGTGCCTTCTGGAGTAATTGGATCTGGTTGCTTAGAAAATGGATATAATCAGAGATTTCAATCTACAGTTCGGCAGCCTTTGAATGCATTTATGGATAATGCATTCGTTCATGGGAATTCTGGTATTCACAACACTGTGAGAGGAACACCGGCGGGAAAAGTGTCCAGTGTTTGTGAGCCGAGTAGCTTTGTTGATGCAATGAAATTGGCATCTGGTTCAAGATTTCAACCCCATTCCTTACCTGAGTATCGTGATAGTTTAGCTAATGGTAGTCCTTATAACTTTTCTAGCTCCATTAGCAACATGACTAACAATATAGGTGCTGGAGCAACAGAAGCCTCTAATGGCAGGCATATTCAGGGAATGGCCTCAACTGGGAATTTAGCAGAATTTAATGCGGGAGGAAATGGGATACGCCCACATCATGGACTTTATCATATGTGGAACAGCTCCAATTTGCAACAGCAACCTTCATCAAGTACCATGCTTTGGCAGAAATCACCTTCATTTGTTAACGATGCTGGTTCTCCGAGCCTTCCACAGATGTCAAGCTTTGCTAGAACACCACCTCATATGCTGAGAACACCACATTTGATGGACCATCATGTTGGATCAGCACCAGTTGTTACAGCCTCACCCTGGGAAAGGCAAAATTCTTACTTGGGAGGGTCCCCTGAGGCTTCTGGTTTTCGCTTGGGTTCTCTAGGGAGTGGAGGTTTTCATGGTTCCTGGCAAATGCATCCACTGGATTTTCCTTCTCACAACATGTTTTCTCATGTTGGTGGGACTGGCACTGAACTGACGTCCAATGCTGGACAGAACTCTCCTAAGCAGTTATCTCATATTTTCCCTGTGAGACATCCTCTGTCTTCAATGTCAAAGTTTGATGCTACCAATGAACGTATGAGAAACCTTTATCACCGTAGAAGTGAAGCAAGCACCAACAATGCTGATAAAAAACAGTATGAACTTGACTTAGGTCGCATTTTGCGTGGGGAAGACAGCCGAACTACACTTATGATAAAAAATATTCCCAACAAGTATACTTCAAAGATGCTTCTTGCTGCAATAGACGAGCAATGTAAAGGAACTTATGATTTTCTGTATTTACCGATTGATTTCAAGAACAAATGTAATGTTGGGTATGCTTTCATAAACATGACTGATCCTGGCCAAATTGTTCCTTTCCACCAGGAGCCTTTCCCCATGGGTGCCAATATTAGACTGAGACCTGGAAAATCTCGCGCTGTTGGCAATGAGGAGAATCGAAGCCTAGGGAGCCCTTCAACTATGGCAAGTGGAGAAGAGTCTGCTAATGGGATAGACTCTTCAAAAAACTCTGATCTAGCCTTCCTTGGGCACTAA | 2685 | 0.4175 | MPFQIMDQRGVSSSSHFFDDISFRSERNVGLRKPKSINGHYPHGNNGMVASPSSILNGTSPLDVNAKAGLLVPQASLPGDSMDSKESSNYRPKSLSDACLQSAPTSYGLIGNRIVTNAAPCESSLFSSSMSEIFSRKLRLFGNNVLSDHPITAGSPPEEEPYKSLEEMEADTIGNLLPDEDDLFNGVVDELGCGSHARANDDFEDFDLFSSGGGMEMEGDEHLSSGKRMTGLDGDFGFFGGSKGKLPFVEQPSRTLFVRNINSNVEDSELKALFEQYGDIRTIYTASKHRGFVMISYHDLRAAQNAMQALQNRPLRSRNLDIHYSIPKVNAPEKDIGHGTLMLSGLDSPVLNDELKQTFEFYGEIKEINEYPEMNSHKFIEFYDVRAAEAALRALNKIDIAGKQIKLEPGHPSLMHQSQKGQEERDLGQSIIDNLSLRQKVPSGVIGSGCLENGYNQRFQSTVRQPLNAFMDNAFVHGNSGIHNTVRGTPAGKVSSVCEPSSFVDAMKLASGSRFQPHSLPEYRDSLANGSPYNFSSSISNMTNNIGAGATEASNGRHIQGMASTGNLAEFNAGGNGIRPHHGLYHMWNSSNLQQQPSSSTMLWQKSPSFVNDAGSPSLPQMSSFARTPPHMLRTPHLMDHHVGSAPVVTASPWERQNSYLGGSPEASGFRLGSLGSGGFHGSWQMHPLDFPSHNMFSHVGGTGTELTSNAGQNSPKQLSHIFPVRHPLSSMSKFDATNERMRNLYHRRSEASTNNADKKQYELDLGRILRGEDSRTTLMIKNIPNKYTSKMLLAAIDEQCKGTYDFLYLPIDFKNKCNVGYAFINMTDPGQIVPFHQEPFPMGANIRLRPGKSRAVGNEENRSLGSPSTMASGEESANGIDSSKNSDLAFLGH | 894 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Aed5g2209 | 894 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 339 | 412 | IPR000504 | GO:0003723 | |
Aed5g2209 | 894 | PANTHER | RNA RECOGNITION MOTIF-CONTAINING | 839 | 882 | - | - | |
Aed5g2209 | 894 | MobiDBLite | consensus disorder prediction | 860 | 886 | - | - | |
Aed5g2209 | 894 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 254 | 327 | IPR000504 | GO:0003723 | |
Aed5g2209 | 894 | PANTHER | RNA RECOGNITION MOTIF 2, NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED | 839 | 882 | - | - | |
Aed5g2209 | 894 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 341 | 406 | IPR000504 | GO:0003723 | |
Aed5g2209 | 894 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 256 | 320 | IPR000504 | GO:0003723 | |
Aed5g2209 | 894 | CDD | RRM1_MEI2_like | 253 | 328 | IPR034453 | - | |
Aed5g2209 | 894 | Gene3D | - | 337 | 433 | IPR012677 | - | |
Aed5g2209 | 894 | PANTHER | RNA RECOGNITION MOTIF-CONTAINING | 2 | 838 | - | - | |
Aed5g2209 | 894 | PANTHER | RNA RECOGNITION MOTIF 2, NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED | 2 | 838 | - | - | |
Aed5g2209 | 894 | MobiDBLite | consensus disorder prediction | 855 | 894 | - | - | |
Aed5g2209 | 894 | SUPERFAMILY | RNA-binding domain, RBD | 778 | 839 | IPR035979 | GO:0003676 | |
Aed5g2209 | 894 | SUPERFAMILY | RNA-binding domain, RBD | 251 | 409 | IPR035979 | GO:0003676 | |
Aed5g2209 | 894 | SMART | rrm1_1 | 340 | 408 | IPR000504 | GO:0003723 | |
Aed5g2209 | 894 | SMART | rrm1_1 | 255 | 323 | IPR000504 | GO:0003723 | |
Aed5g2209 | 894 | SMART | rrm1_1 | 778 | 852 | IPR000504 | GO:0003723 | |
Aed5g2209 | 894 | Gene3D | - | 248 | 336 | IPR012677 | - | |
Aed5g2209 | 894 | Pfam | RNA recognition motif 2 | 776 | 838 | IPR007201 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Aed5g2209 | Aed-Chr5 | 24144239 | 24152306 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Aed5g2209 | 252 | 405 | Eukaryotic Initiation Factors Gene Family | AT1G71770 | 24.691 | 4.72e-08 | 55.1 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Aed5g2209 | - | - | gmx:100797893 | 1536.55 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Aed10g0763 | 10 | 6249078 | 6257523 | Aed5g2209 | 5 | 24144239 | 24152306 | ECH | |
Aed5g2209 | 5 | 24144239 | 24152306 | Aed5g2209 | 5 | 24144239 | 24152306 | ECH |