Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2205 ATGGAAAGAGACCATTTCCTTTGGAAGAAGAAGAAGAAGCGTTTCCGATTTATTCTTCTCGACACGTCGGCTGTGGTATCGGCTCTTGTTCAAGTAATTGGTGGCAATCCAACAACACCGTCTCAATCCACCACCACTACTGTTGTTGGGAATCATTCCAATCAACCATCACGACATCAAGGTGGAAACTTAACAAGGCAGTATAGAGGAGTGAGACAGCGACCGTGGGGCAAGTGGGCGGCGGAGATTCGCGACCCAAAGAAAGCAGCTAGAGTTTGGCTTGGAACCTTTGAAACTGCTGAGGCTGCCGCACTCGCTTACGATGAGGCAGCTCTCTCTTTCAAAGGAACCAAAGCTAAGCTTAATTTTCCAGAAAGGGTTCATCTCTCTAAGGATTTTGGTTACCTCACTAATCGTCCACACGCCGCCGCCACGTCACTCACTCACGTGGCTGTTTCTGCTGTAACTTCGTCTTCGTTTACGATGCAACCTGAGCCTCCTAAGAAACGAAGGACAACTGATGCCAAAGACAAACTATAA 540 0.4796 MERDHFLWKKKKKRFRFILLDTSAVVSALVQVIGGNPTTPSQSTTTTVVGNHSNQPSRHQGGNLTRQYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEAAALAYDEAALSFKGTKAKLNFPERVHLSKDFGYLTNRPHAAATSLTHVAVSAVTSSSFTMQPEPPKKRRTTDAKDKL 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2205 179 SUPERFAMILY DNA-binding domain 67 125 IPR016177 GO:0003677
Aed5g2205 179 ProSiteProfiles AP2/ERF domain profile. 67 124 IPR001471 GO:0003700|GO:0006355
Aed5g2205 179 MobiDBLite consensus disorder prediction 158 179 - -
Aed5g2205 179 Gene3D AP2/ERF domain 66 126 IPR036955 GO:0003700|GO:0006355
Aed5g2205 179 MobiDBLite consensus disorder prediction 37 63 - -
Aed5g2205 179 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110 39 162 - -
Aed5g2205 179 PANTHER DNA-BINDING DOMAIN 39 162 IPR044808 GO:0003700|GO:0009873
Aed5g2205 179 Pfam AP2 domain 67 116 IPR001471 GO:0003700|GO:0006355
Aed5g2205 179 CDD AP2 67 125 IPR001471 GO:0003700|GO:0006355
Aed5g2205 179 PRINTS Ethylene responsive element binding protein signature 68 79 IPR001471 GO:0003700|GO:0006355
Aed5g2205 179 PRINTS Ethylene responsive element binding protein signature 90 106 IPR001471 GO:0003700|GO:0006355
Aed5g2205 179 SMART rav1_2 67 130 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2205 Aed-Chr5 24114224 24115495 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2205 21 137 AP2-EREBP Transcription Factor Family AT5G61890 59.690 2.67e-43 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aed5g2205 AP2 2.8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2205 - - gmx:100793410 171.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g0757 10 6211199 6214110 Aed5g2205 5 24114224 24115495 ECH
Aed5g2205 5 24114224 24115495 Aed5g2205 5 24114224 24115495 ECH
Aed5g2205 5 24114224 24115495 Aed10g0757 10 6211199 6214110 PCT