Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2179 ATGCCACTTTTAAGGAGAAAGCCTTTTGCCTTGGCTGAGCCTCCTGAGGATTTGAAGCTAGATGAGCCTGTTTACCAAATTCGATTTACAAAAGAAGTCTTTCAAGATTATCAAGATAATGGTTCCTTAACATGGAGTAGTGACTATTTGAAGCGATTGAATCTATACCGTCAGAGGGTTTGGATGTGTAAAGTCACTGGAAAAACTTGCTTGACTTATGAAGAGGCTTTGGTGTCTGAACAACTTGCTACCGAGAAAGTTCAACAGTTTCCTAAAGAATTGATGACTATTGCTTTAAGGATTATTCAATACATTCTAATCCCTCCTGAATCTCCCGACTTTGTGAGAATGTTTGGTGGTATGGTCCCTTTGAAGGATCTTGCTGATTCTATTGGTGAAAAATTGCAGGAACGTTTGTTTGTGGGTGCTGAACTATATGGGAAAAAGGATGATGGAGTTCATCCATGCAAAATATTAAAAGTCATTCAGAAAGGAGTTGACGCAGTCTCTTATGAGGTAGCTTGGCTGGACAAAAACAAGAATATAGGAGAACAAGCAGAAGTCAGTGCAGAAGATTTGGTGCATAAGAAGCCGCTTTTTAGTAGAAATATTTTGAAGTCTTTTATTCGTGAGTCTACATATCGGAATGCCCCTTGGGTTTTACATGATGAACTGGCAAAAAATCATGGAATATCAACTGACATTCCTGAGGAGTTAAGAGGAAGGGTTTTTTACAAAGATGGACTTTTAGTTTGCTCCAAGAAAAGAAAAAATGAGGAATCACTGGAAGACACTGATAACTGTAAAAGGAAGAAGTTGCATGAGGCACAAGTTGACGATTCTGGCCAAGAGAAAGAAAATGGTCAACACAAGGATGAAGCCATCAAATACCCCATTGATGATCTATTGGTGACTCCTAGTCCAGATGATCCTGTTTTCACTGATCGTCCTTCTCCTTCAAAAGACTTCAATATTCCAATGAGAAGTGTAGGGGATCTCTTGATGGTATGGGATTTTCTTAGTTCCTTTGGTAGACTGTTGCAGCTGAGCCCCTACTCTCTACAAGATTTTGAAATTGCAATCTGTCATAAGGATAGCAATTTGGCTCTCATTGTGGAATCTCATGCAGCAGTTTTTCGACTTCTCATCAAAGATGATGATGAATACTCTTTGGCTGTGAAGAACCGAAAATTGAAGTCTAAGATTACAACAAATAATTGGACAGATTATTTATGCCATTTTCTAGAGATGATCAATATTCGTGAACTACGGCACCATGCAACTACTATAAAACGGGGACATTATGGCCTTGTAGATGCCAGTGTTAAATTAAAAATCTTAGGCGAATTGGTCAATCGAGCCCTTGAAACTGCAATTTTCAGGGAAAAGTTAGATGAGATTATTGAACAGCGGCAGGCACTTGGGGCCACTAGATGGGGAGAAGCATTGGAAAATCGTAGGCGGAGAAGAGAAGAAAAGGAGCGGTTGAAAGCTGAGTCAGAAAGCAATGGATTTGGGGATGGGCATCATCTGAACAGTGCATATGTCCTAGCAAACAATAATCATGGTATACAAAATGGAGATGTGGGAGAGAGAAGAATTATAGAGATAGAACCATCTGGGCAAAATGATCCATTGGGTAGAAGTGGGATCGAGCATTTAAATCCTGCTCCGAAAAAGGCACCTAAGAAGTTAAATTCAGAGCTGAAAGAACCAACAGAAAATGGAAAAGAATTATCCAGAAAGGGATCACCGAAACAGTTGAAGGCTGATAAGGATCCATCAGAGAATATTAATATAGAACAGAGGAAAGAATATTTCGAACGGGAGATGGAGAAACGATTTATTCGCAGAAGCCCATTAGGTAAGGACAGAGATTACAACAGGTATTGGTGGTTCCGTCGTTATGGGAGGATATTTGTTGAAAGCTGTGACTCCGAGGAGTGGGGATACTACAGCAGTAAGGAAGAGCTTGATGCATTGATGAGTTCACTGAATTGCAAGGGCGAGCGCGAAAGGGCACTGCAAAAGCAACTAAAACAATATTATAGTACAATATGCTCAGAACTCCAGAAAACATCGAAGGATTTGATGCACAGGTTTGTAGATGAGTCTGTGCTCCGTAGGTCTACTCGTGTTAGAGCTCAACCTAGGCAGAACAGTGTCGATGCTTGCCTCAGATATAAAAACAAGTACTATAAAGAAGAATAG 2211 0.4012 MPLLRRKPFALAEPPEDLKLDEPVYQIRFTKEVFQDYQDNGSLTWSSDYLKRLNLYRQRVWMCKVTGKTCLTYEEALVSEQLATEKVQQFPKELMTIALRIIQYILIPPESPDFVRMFGGMVPLKDLADSIGEKLQERLFVGAELYGKKDDGVHPCKILKVIQKGVDAVSYEVAWLDKNKNIGEQAEVSAEDLVHKKPLFSRNILKSFIRESTYRNAPWVLHDELAKNHGISTDIPEELRGRVFYKDGLLVCSKKRKNEESLEDTDNCKRKKLHEAQVDDSGQEKENGQHKDEAIKYPIDDLLVTPSPDDPVFTDRPSPSKDFNIPMRSVGDLLMVWDFLSSFGRLLQLSPYSLQDFEIAICHKDSNLALIVESHAAVFRLLIKDDDEYSLAVKNRKLKSKITTNNWTDYLCHFLEMINIRELRHHATTIKRGHYGLVDASVKLKILGELVNRALETAIFREKLDEIIEQRQALGATRWGEALENRRRRREEKERLKAESESNGFGDGHHLNSAYVLANNNHGIQNGDVGERRIIEIEPSGQNDPLGRSGIEHLNPAPKKAPKKLNSELKEPTENGKELSRKGSPKQLKADKDPSENINIEQRKEYFEREMEKRFIRRSPLGKDRDYNRYWWFRRYGRIFVESCDSEEWGYYSSKEELDALMSSLNCKGERERALQKQLKQYYSTICSELQKTSKDLMHRFVDESVLRRSTRVRAQPRQNSVDACLRYKNKYYKEE 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2179 736 ProSiteProfiles DDT domain profile. 327 388 IPR018501 -
Aed5g2179 736 ProSiteProfiles WAC domain profile. 22 151 IPR013136 -
Aed5g2179 736 MobiDBLite consensus disorder prediction 485 504 - -
Aed5g2179 736 MobiDBLite consensus disorder prediction 539 601 - -
Aed5g2179 736 MobiDBLite consensus disorder prediction 485 508 - -
Aed5g2179 736 MobiDBLite consensus disorder prediction 557 601 - -
Aed5g2179 736 SMART testlast3 327 388 IPR018501 -
Aed5g2179 736 Pfam DDT domain 329 385 IPR018501 -
Aed5g2179 736 Pfam ATP-utilising chromatin assembly and remodelling N-terminal 24 104 IPR013136 -
Aed5g2179 736 PANTHER BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN, 2A 1 734 - -
Aed5g2179 736 Coils Coil 483 503 - -
Aed5g2179 736 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 616 682 IPR028941 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2179 Aed-Chr5 23927226 23933561 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2179 433 692 Homeobox Transcription Factor Family AT5G44180 27.509 9.49e-08 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Aed5g2179 WAC_Acf1_DNA_bd 6.6e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2179 - - gmx:100789956 1244.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g2179 5 23927226 23933561 Aed10g0721 10 5905354 5910440 PCT