Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2172 ATGGCAAGTAGTACTCCTGCGGTGAATTCTTCATCGTTGCCAATAGCATACCAAGCATGGACAAGCCTCGCTGTTCCAGATTGGTTGAACAAAGGAGACAACGCATGGCAAATGGTATCAGCCACCTTGGTCGGGATTCAGAGCATGCCGGGCCTCGTCATCCTCTACGGAAGCATCGTAAAAAAAAAATGGGCCGTTAACTCCGCCTTCATGGCTCTCTACGCTTTTGCCGCCGTGATCATCTGTTGGGTCACGTGGGCCTACAAGATGTCGTTTGGGGAGGAGCTGCTGCCGTTTTGGGGCAAGGCCGGGCCCGCGCTGGGCCAGAGGTTTCTCATCAAGCAGGCAGGCCTGCCCGCCACGTCGCATTATTTTAAAAACGGTGATTTGGAGACGGCTGAGATAACGCCGTACTATCCGATGGCTACCATGGTGTGGTTCCAGTGTGTTTTTGCGGCCATTGCGCTTGTTATATTGGCTGGCTCGGTTCTGGCTAGGATGAACTTCAAGGCCTGGATGATGTTTGTGCCGCTTTGGCTAACTTTCTCTTACACCATTGGTGCCTTTAGTTTGTGGGGTGGAGGCTTCTTGTTCCACTGGGGCGTCATGGACTACTCTGGTGGCTATGTCATTCATCTCTCTTCCGGGATTGCTGGCTTCACTGCTGCTTATTGGGTGGGTCCAAGATCGAAGAAGGACAGAGAAAGATTCCCGCCAAACAACGTGTTACTAACGTTGGCGGGGGCAGGGCTTTTATGGTTGGGATGGGCAGGTTTCAACGGAGGAGATCCGTACGCGGCAAACACAGACTCGTCGATGGCGGTGCTCAACACCAACATTTGCGCCGCCACCAGCCTCCTCGTATGGACCTGGCTTGACGTTATTTTCTTCAAAAAACCCTCTGTTATTGGAGCCGTTCAGGGCATGATAACTGGCCTTGTTTGCATCACCCCCGGAGCTGGTTTGGTTCAAGGATGGGCAGCCATAGTGATGGGAGTTCTATCAGGCAGTGTCCCATGGTACAGCATGATGGTATTAGGAAAAAAGATGAAAATGTTTGAAATGGTTGATGACACTCTTGCTGTGTTCCACACTCATGCTGTGGCTGGTCTTCTTGGAGGAATACTCACTGGCCTATTTGCCGAGCCACGTCTAAGTGCACTTTTTCTGCCTGTGACAAACTCCAAAGGAGGTGTCTATGGAGGCCCTGGTGGGGTCCAAATCCTCAAACAAATCGTCGGAGTTCCATTGAGAATGACCGAGGAAGAGCTTCTCATTGGAGATGATGCTGTTCATGGGGAAGAGGCTTATGCACTTTGGGGTGATGGAGAGAAACTTAGCATCTACAAAGATGACACCACACACCATGGAATAATGGTCTCTAGTGGTGCCACTCAAGTTGTCTAG 1407 0.5117 MASSTPAVNSSSLPIAYQAWTSLAVPDWLNKGDNAWQMVSATLVGIQSMPGLVILYGSIVKKKWAVNSAFMALYAFAAVIICWVTWAYKMSFGEELLPFWGKAGPALGQRFLIKQAGLPATSHYFKNGDLETAEITPYYPMATMVWFQCVFAAIALVILAGSVLARMNFKAWMMFVPLWLTFSYTIGAFSLWGGGFLFHWGVMDYSGGYVIHLSSGIAGFTAAYWVGPRSKKDRERFPPNNVLLTLAGAGLLWLGWAGFNGGDPYAANTDSSMAVLNTNICAATSLLVWTWLDVIFFKKPSVIGAVQGMITGLVCITPGAGLVQGWAAIVMGVLSGSVPWYSMMVLGKKMKMFEMVDDTLAVFHTHAVAGLLGGILTGLFAEPRLSALFLPVTNSKGGVYGGPGGVQILKQIVGVPLRMTEEELLIGDDAVHGEEAYALWGDGEKLSIYKDDTTHHGIMVSSGATQVV 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2172 468 SUPERFAMILY Ammonium transporter 28 416 - -
Aed5g2172 468 Gene3D Ammonium transporter AmtB like domains 9 440 IPR029020 -
Aed5g2172 468 PANTHER AMMONIUM TRANSPORTER MEP2 415 450 IPR001905 GO:0008519|GO:0016020|GO:0072488
Aed5g2172 468 PANTHER AMMONIUM TRANSPORTER MEP2 21 414 IPR001905 GO:0008519|GO:0016020|GO:0072488
Aed5g2172 468 ProSitePatterns Ammonium transporters signature. 204 229 IPR018047 GO:0008519|GO:0016020|GO:0072488
Aed5g2172 468 PANTHER AMMONIUM TRANSPORTER 415 450 - -
Aed5g2172 468 PANTHER AMMONIUM TRANSPORTER 21 414 - -
Aed5g2172 468 PRINTS Rhesus blood group protein signature 148 164 IPR002229 GO:0005887
Aed5g2172 468 PRINTS Rhesus blood group protein signature 329 347 IPR002229 GO:0005887
Aed5g2172 468 PRINTS Rhesus blood group protein signature 274 296 IPR002229 GO:0005887
Aed5g2172 468 PRINTS Rhesus blood group protein signature 243 261 IPR002229 GO:0005887
Aed5g2172 468 Pfam Ammonium Transporter Family 35 414 IPR024041 GO:0008519|GO:0016020|GO:0072488
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2172 Aed-Chr5 23871412 23874351 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2172 141 456 Inorganic Solute Cotransporters AT2G38290 67.751 1.45e-155 444
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2172 K03320 - gmx:100785993 875.159