Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2171 ATGTTTCACCAAAATATTAGCAGGGGTCCTCTCAAAAAATTGACGAGGTGGCTCATATTCCTTACTATCTTGCAAGTTAGTTGTGCTATCAAAGAACCTGATGTAGAAGGTGTGGTAAACTTTGCTGCTATTCTTTCCTCGCCAGAAGCATATGATCAAATAAAAGACTGGGACAGTTTTTTAGTGAGCCCGTGCTTCAGTTGGTCTCATGTCACATGTAGAAACGGGCATGTCATATCCCTGGCCTTGGCTTCAATTGGATTTTCTGGAACACTCTCTCCCTCAATTACCAAATTGAAATATTTGTCTAACTTGGAATTACAGAACAACAATCTTTCAGGACCCTTGCCTGATTACATTTCCAACTTGACAGAGTTACAATATCTAAATCTTGCTGACAATAACTTTAATGGTTCTATACCAGCTAAATGGGGAGAACTATCCAATTTAAAGCATATGGATCTTTCATCTAATGGTCTTACTGGAAATATCCCAGTGCAACTCTTTTCAGTTCCATTGTTTAACTTTTCAGATACGCACCTTCAGTGTGGCCCTGGCTTTCAGCAGCCCTGCTCTTCTAAATCTGAAAATCCAGCTTCAACCCACAAATCAAAATTGGCAAAAATTGTACGTTATGCAAGTTGTGGTGCATTTGCACTTCTGTGTCTAGGTGCTATCTTTACGTATCGACACCATCAAAAGCATAGGCGCAAAAATGATGTCTTTGTTGATGTTTCAGGTGAAGACGAGATAAAAATATATTATGGGCAATTGCGAAAATTTTCTTGGCGTGAAATCCAAAATGCCACTAAGAATTTCAGTGAAGGCAATGTAATTGGTCAGGGTGGCTTTGGAAAAGTGTACAAAGGAGTACTCCCTGATAACACAAAAGTCGCTGTGAAACGCCTCACTGATTATCACAATCCTGGTGGAGAGGCTGCATTCGAAAGAGAAGTTCAACTAATAAGTGTTGCAGTTCATAGAAACCTCCTCAGACTAATTGGCTTCTGCACAACCACAACTGAAAGAATCCTTGTTTACCCTTTCATGGAAAATCTTAGTGTAGCATATCGACTGAGAGATTTAAAACCTGGGGAAAAAGGCTTAGAGTGGCCTACAAGGAAACGCGTGGCTTTTGGCACAGCTCATGGTTTGGAGTATCTACATGAGCAATGCAATCCTAAGATAATACATCGTGATCTAAAGGCTGCAAATATCCTTCTTGATGATGAATTTGAAGCTGTGCTAGGTGACTTTGGTCTGGCCAAGCTGGTTGATGCAAGAATGACTCATGTCACCACTCAAGTGCGTGGTACAATGGGTCACATTGCTCCAGAGTATTTGTCCACTGGAAAATCTTCAGAAAAGACCGATGTTTTTGGATATGGCATAACACTTCTTGAACTTGTCACCGGTGAGCGTGCAATTGACCTCTCTCGGCTTGAAGAGGACGAGGATGTTCTTCTCATTGATTATGTGAAAAAGCTGCTGAGAGAGAAGAGGCTGGAAGACATTGTGGATAGAAATTTGGAGAGTTATGATCCAAAGGAAGTTGAGACCACTCTTCAGGTTGCATTGCTTTGCACCCAAGGCTATCCAGAGGATCGTCCAACCATGTCAGAGGTGGTAAAAATGCTGCAGGGAGTGGGTTTGGCAGATAGATGGGCAGACTGGCTGCAACTTGAAGAGGCCAGGAATCAAGAACTCTCACTCATGACTCACCAATTTGTTTGGAATGATGAATCTACTCTTGATCAAGAAGCCATTCAGCTTTCCAGAGCAAGATAA 1788 0.4167 MFHQNISRGPLKKLTRWLIFLTILQVSCAIKEPDVEGVVNFAAILSSPEAYDQIKDWDSFLVSPCFSWSHVTCRNGHVISLALASIGFSGTLSPSITKLKYLSNLELQNNNLSGPLPDYISNLTELQYLNLADNNFNGSIPAKWGELSNLKHMDLSSNGLTGNIPVQLFSVPLFNFSDTHLQCGPGFQQPCSSKSENPASTHKSKLAKIVRYASCGAFALLCLGAIFTYRHHQKHRRKNDVFVDVSGEDEIKIYYGQLRKFSWREIQNATKNFSEGNVIGQGGFGKVYKGVLPDNTKVAVKRLTDYHNPGGEAAFEREVQLISVAVHRNLLRLIGFCTTTTERILVYPFMENLSVAYRLRDLKPGEKGLEWPTRKRVAFGTAHGLEYLHEQCNPKIIHRDLKAANILLDDEFEAVLGDFGLAKLVDARMTHVTTQVRGTMGHIAPEYLSTGKSSEKTDVFGYGITLLELVTGERAIDLSRLEEDEDVLLIDYVKKLLREKRLEDIVDRNLESYDPKEVETTLQVALLCTQGYPEDRPTMSEVVKMLQGVGLADRWADWLQLEEARNQELSLMTHQFVWNDESTLDQEAIQLSRAR 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2171 595 SMART serkin_6 273 546 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed5g2171 595 Gene3D Transferase(Phosphotransferase) domain 1 350 565 - -
Aed5g2171 595 ProSitePatterns Protein kinases ATP-binding region signature. 279 301 IPR017441 GO:0005524
Aed5g2171 595 PANTHER LRR RECEPTOR-LIKE KINASE 16 595 - -
Aed5g2171 595 SUPERFAMILY Protein kinase-like (PK-like) 251 547 IPR011009 -
Aed5g2171 595 Pfam Leucine rich repeat 102 160 IPR001611 GO:0005515
Aed5g2171 595 ProSiteProfiles Protein kinase domain profile. 273 559 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed5g2171 595 Gene3D Phosphorylase Kinase; domain 1 242 349 - -
Aed5g2171 595 Gene3D Ribonuclease Inhibitor 35 197 IPR032675 -
Aed5g2171 595 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 16 595 - -
Aed5g2171 595 SUPERFAMILY L domain-like 51 171 - -
Aed5g2171 595 Pfam Protein kinase domain 274 544 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed5g2171 595 ProSitePatterns Serine/Threonine protein kinases active-site signature. 396 408 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2171 Aed-Chr5 23849842 23855212 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2171 18 595 Receptor kinase-like Gene Family AT5G10290 54.876 0.0 645
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Aed5g2171 Pkinase 6.7e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2171 - - gmx:100800886 1096.65