Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2165 ATGGATTCGAGTTCGGGGCATCAAGAATTCGATTATTCTTTTAAGTTGTTGATGATTGGAGATTCTGGGGTTGGCAAGAGTAGTCTTCTTCTCAGTTTCACCAACGATGCTTTTGAAGATCTCTCCCCCACTATTGGTGTTGATTTTAAGGTCAAATATGTGACGGTGGGGGGTAAAGAGCTGAAGCTTGCAATCTGGGATACTGGTATTCACTTTCTGGTCAGGAGAGATTCAGAACACTGTCAAGTTCTTACTACAGAAGGGCACAAGGAATCATCATGGGCAAGTTTCTGTTCTCCATTTTCTGACTTGCCATCTTCCCCTATTTTGGATTCACCACAAAATGGTAGCAATATCTGTGTTAGATGCAATGTGTTTAATGGTCTTTGGAAACCAGGAGGGTGGTCCTTCCAAGTCAATGTAGTGTTGAAATTTGACTTTGGATTAGCTGCTAATTTTGTTCCTCTAACTAATGCAGTTTATGATGTAACCCGGCGAGATACATTTACAAATCTTTCTGAAATATGGGCAAAGGAAATAGACCTTTATTCAACTAATCAAGATTGCATCAAGATGCTTGTTGGAAACAAAGTAGACAAGGAGGGTGATAGAGTTGTGACAAAGAAAGAGGCAATAGACTTCGCAATGTTAGGAATCTGGTTGCCTATTCTGGATACACCTAGCCTCTTAGCCGAGTTCTCAAAGAGAACAACTACGACAATGAGGCAGAAGAGAACGGCAATGACCACCATGAAGAGTTGGATGCCTGTGATAACCGGACGTGAAAAAGCTATTGTGGTGAGGTTGGAAAATATGAAAGGAATAATCAGTGCAACGGAGGTTCTACTAATCAACTCCTCCGACCCTTTCTTTTTTCGCTTCGCTCAAGTTCTTCAAAGACGTCTGATGAGCAATAGTATCATGCATGCCAGTGACGAGGACTCTGCTGATGACGCGTTACAAGCTATAAGCCCTTCTTCAGGTCCCAAGCGGTTACCATTTGAGTTCCAAACACTCGAGACATGTATTGAATATGCTTGCAGGCACCTGCAAGCATATTCAATACATGTCTCGAGTGTTTGGAACTCAAATGGTAACCGCTTGGGACCTGAAGAAGGGCTTATAGCTTGTAACGCGTCATCAGCAGAGTCCTCGTCACTGGCATGCATGATACTATTGCTCATCAGACGTCTTTGA 1197 0.4269 MDSSSGHQEFDYSFKLLMIGDSGVGKSSLLLSFTNDAFEDLSPTIGVDFKVKYVTVGGKELKLAIWDTGIHFLVRRDSEHCQVLTTEGHKESSWASFCSPFSDLPSSPILDSPQNGSNICVRCNVFNGLWKPGGWSFQVNVVLKFDFGLAANFVPLTNAVYDVTRRDTFTNLSEIWAKEIDLYSTNQDCIKMLVGNKVDKEGDRVVTKKEAIDFAMLGIWLPILDTPSLLAEFSKRTTTTMRQKRTAMTTMKSWMPVITGREKAIVVRLENMKGIISATEVLLINSSDPFFFRFAQVLQRRLMSNSIMHASDEDSADDALQAISPSSGPKRLPFEFQTLETCIEYACRHLQAYSIHVSSVWNSNGNRLGPEEGLIACNASSAESSSLACMILLLIRRL 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2165 398 Gene3D - 1 233 IPR027417 -
Aed5g2165 398 PRINTS Transforming protein P21 ras signature 36 52 - -
Aed5g2165 398 PRINTS Transforming protein P21 ras signature 54 76 - -
Aed5g2165 398 PRINTS Transforming protein P21 ras signature 14 35 - -
Aed5g2165 398 SMART rab_sub_5 14 248 - -
Aed5g2165 398 PANTHER SMALL MONOMERIC GTPASE-RELATED 160 215 - -
Aed5g2165 398 Pfam Ras family 15 68 IPR001806 GO:0003924|GO:0005525
Aed5g2165 398 Pfam Ras family 160 215 IPR001806 GO:0003924|GO:0005525
Aed5g2165 398 Gene3D - 234 287 - -
Aed5g2165 398 PANTHER DRAB5-RELATED 160 215 - -
Aed5g2165 398 PANTHER DRAB5-RELATED 1 69 - -
Aed5g2165 398 ProSitePatterns Sigma-54 interaction domain ATP-binding region A signature. 16 29 IPR025662 -
Aed5g2165 398 ProSiteProfiles small GTPase Rab1 family profile. 9 324 - -
Aed5g2165 398 PANTHER SMALL MONOMERIC GTPASE-RELATED 1 69 - -
Aed5g2165 398 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 14 217 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2165 Aed-Chr5 23803524 23806392 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2165 258 359 MRS2 Gene Family AT1G80900 40.909 2.06e-16 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2165 K07910 - gmx:100787603 128.642