Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2154 ATGGCAAAGGAACAAGTCAGTAATGATGGTTCCACCAGTGTTGAGAATGGGGATTTAGAATCTCATTCTCGAATTAGTCTGGACAATGAGACAGGCTTGGGAACTTGTCGTGTGTGCCAATGCACTGAATCTGATAAAAGGGCAGATTCAGCACTAGAATTTTTGGGCATCGCTCCAGTTTCAGAAATTTCTAAAACCAAGAGGGAAGGGGAACTAGCCTCTGATGCTGATGATGGAATTCCCCAAAATACGTCTCTTAACAAAGATACTGGGATGGTGGAATTTGTAAGCCCTGATGGGGAGGTTTTCATTTGTAAGAGTGATTTGGAACTTGGTTTGTCTCATCAAGATAGATTAGTTGAACTTGGGTGTTCTTGTAAAAACGATCTTGCTTTAGTACATTATGCCTGTGCACTCAAGTGGTTTGTCAACCATGGATCTACCATTTGTGAGATATGTGGCCATATAGCAAATAATATCAGAATTTCTGACTTCAATAAGGTTGTTAGTGCTTTGAAGGAGTACGAAGTATTGAGGGAAAGAACTGCTAGTGGGGATCCTGGTGCTGCACAAGTTCTTGCAAATGCTGGTGTGGATCCTGATGCCGTGGCTGCTATCCGGAGGCAACGGCTAATTGAGATTGCACTATGGTTTTGTCCTTATAGTAGCAGTCACAATAACAACATTAGCAGTGTGGACACAGTTTCACAGATTGTTTCTGAGCAGCCTTTGAATATTGCTACTGAAGATGCTGCCCCTGCACAGAATCCTGCAACCAAGTGGGCCGTGGAGGGTACAGGGATCTTGCTTGCTACGGGGCTGCTTACCATCACCCTTGCATGGCTTATAGCTCCTCGTGTTGGAAAGTTTTCAAGATTCCTTCCAAGCCTCGACAAACCTATCTCAGAGCCTAAAGGTTCCTCCAAGATCAATTCTTTTGTTTGGTTGATGAAAACTGCCAAAAGTGGTCTTCATATCTTACTTGGAGGTGTTTGTGCTTTAGCCGTGGTGGTTTTCTTCCGCTTTTTTGTGCTTACCAGAATCAAGTATGGACCTGCACGATATTGGGCAATCTTGTTCGTTTTCTGGTTTCTTGTCTTTGGAATATGGGCTTCAAGGACCCATGGTGCCCATACAACATAA 1143 0.4357 MAKEQVSNDGSTSVENGDLESHSRISLDNETGLGTCRVCQCTESDKRADSALEFLGIAPVSEISKTKREGELASDADDGIPQNTSLNKDTGMVEFVSPDGEVFICKSDLELGLSHQDRLVELGCSCKNDLALVHYACALKWFVNHGSTICEICGHIANNIRISDFNKVVSALKEYEVLRERTASGDPGAAQVLANAGVDPDAVAAIRRQRLIEIALWFCPYSSSHNNNISSVDTVSQIVSEQPLNIATEDAAPAQNPATKWAVEGTGILLATGLLTITLAWLIAPRVGKFSRFLPSLDKPISEPKGSSKINSFVWLMKTAKSGLHILLGGVCALAVVVFFRFFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHGAHTT 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2154 380 MobiDBLite consensus disorder prediction 66 87 - -
Aed5g2154 380 MobiDBLite consensus disorder prediction 1 25 - -
Aed5g2154 380 PANTHER ZINC FINGER, RING-CH-TYPE 11 289 - -
Aed5g2154 380 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 318 379 - -
Aed5g2154 380 SUPERFAMILY RING/U-box 117 156 - -
Aed5g2154 380 PANTHER ZINC FINGER, RING-CH-TYPE 318 379 - -
Aed5g2154 380 Pfam RING-variant domain 119 153 IPR011016 GO:0008270
Aed5g2154 380 ProSiteProfiles Zinc finger RING-CH-type profile. 94 160 IPR011016 GO:0008270
Aed5g2154 380 SMART ringv_2 104 154 IPR011016 GO:0008270
Aed5g2154 380 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 156 IPR013083 -
Aed5g2154 380 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 11 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2154 Aed-Chr5 23741522 23749731 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2154 6 370 C3H Transcription Factor Family AT5G08750 59.091 2.83e-145 414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2154 - - gmx:100805323 569.311