Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2146 ATGGCGAACAACAGGAGCACTAAGAAACCAATGAGTCTCAACGACAATCACTATCGCTTCCTACAGGAGCACTCTGCTGCTCCCAAATCTTCATCCAAACACACCTTCGATGAAGAATCAATCGAAGTCTCCATCAGAAAACACCAACACCAACACCAAAACATCCCCCAATTTTCCGCAATCACCGACTTCGATTCTCCTCCATTCGGGTTAAACTCGGATGAGAAACAACAACAAGCTCCATCCAATGATATTCCCCAATTTTCGCTTAACTCTACTCCTAGGCAAAACTCGGACGAGAAACACGAACCAATCAAGTTTCATGATGATGATGAAGAAGAAGAAGAAGAAGCTCGACTAAATGATATTCCCCAATTTTCGTTTATTAGTCAAAACTCGGACGTGAAACATGACCCGATCAAGTTTCATGATGATGATGAAGAAGAAGAAGAAGAAGCTCCACCCGTCGTGGTTAATTTCCCCCCTAAGGAAGAAAAAAAGACGAAGGTGAAAGTACAGGGGCGACGTCGCCTCTGCAAGGTTGTGCATGAAGATGCAGGCAAAAGTGCAGCGGATGATGAGTCCAAGTTTGATGAACTTATCGACCTTGATTCTCCAATTCCGGCACCGAGAGAGGTGATCCAGATTGAGGAGAGTGGGGGTAAGAATGAAATTAGGGATATTTTGAACGAACTGAACTCCAAGTTTGAGTTGCTGTCGGTTGAGAGGAAGCCGAAACCAAAGCTTGTTGGGGGTTTGGTTGGAGGAAAAGAAAGTTGTGATGACGAGGGTTCAGAGTTTGGGAGTGCAGGGTCTTCGTTTTCTCCAGAACAGGGGAGTTTGTCAGAGGGTACTAAGGATAGTGGTGGTGGTGGTATTGAGTATGACTCAGATGATTCTGTTCAAGTATTGGATCACTCTGAGCCTGTGAGTGATGGTTCTATAACTTTGACTGGCCCCAGATCGACTTTTAAGTTGCAGCCTAAAATTGCGAAAATGTTGTATCCACATCAGCGGGAGGGGTTGAAGTGGCTTTGGTCTTTGCATTGTCTGGGAAAAGGTGGAATCTTGGGGGATGACATGGGTTTGGGGAAAACAATGCAGATTTGTGGCTTTCTGGCTGGATTGTTTCATTCTCGATTAATTAGAAGGGCATTGGTTGTAGCCCCCAAAACCTTATTGCCCCATTGGATCAAAGAATTGGCAGTTGTGGGTCTATCCGAGAAGACAAGAGAATATTTTGCAACTTCTGCAAAACTCAGAGAATATGAACTTCAGTACATACTTCAGGACAAAGGAGTTCTTCTCACAACATATGATATTGTCCGCAACAATTTTAAGTCCTTACAAGGGGGTAATTATTTTGATGATGAGGATAATGAAGATGGCGCTACATGGGACTACATGATACTTGATGAGGGACACCTTATAAAGAACCCAAGCACTCAAAGGGCTAAAAGCTTGCTTGAAATACCAAGTGCTCATCGCATTATCATTAGTGGTACGCCTTTGCAAAATAATCTGAAGGAGTTGTGGGCATTGTTCAATTTCTCTTGCCCAGAGTTGCTTGGTGACCACAAATGGTTCAAAGAAAGATTTGAAATGCCCATACTTCGTGGAAATGACAAACATGCTTCTGACAGGGATAAACGTGTTGGTTCATCTGTAGCAAAGGAACTAAGAGATCGTATTCAGCCTTACTTTTTAAGACGTTTGAAGAGTGAGGTTTTCAGTCAAGATAGTGAGGAAACAACTGCAAAACTTTCTCAGAAACAAGAGATCATTGTGTGGCTTCGACTGACCAGTGTTCAGCGGCATCTTTATGAAGCATTTTTGAAGAGTGAGATTGTTCTCTCAGCATTTGATGGCTCACCACTGGCTGCCCTTACGATTTTGAAGAAAATATGTGATCATCCATTGCTGTTGACGAAGCGGGCAGCTGAGGATTTGTTGGAAGGGATGGACTCAATGCTAAAGCCAGAAGAGGCTAATCTTGCAGAAAAAATGGCAATGCATATAGCAGATGTTGCAGGCACAGATAAGTTTAAAGACGAGCAAGATGTGTCATGCAAAATTTCCTTCATTATGTCATTATTGGATAATTTGATCCCAGAAGGGCATTGTGTGCTTATATTTTCTCAGACTCGCAAGATGCTTAATCTTATTCAGGAATGCCTAATATCCGAAGGTTATGACTTTTTACGAATTGATGGCACAACAAAACCCAGTGACAGACTAAAAATTGTTAATGATTTCCAAGAAGGTGCTGGAGCTCCTATATTTCTCTTGACATCTCAGGTTGGCGGTTTAGGGCTAACACTTACAAGAGCAGATCGTGTGATTGTAGTTGATCCTGCTTGGAACCCAAGTATGGATAATCAAAGTGTTGACCGAGCATATCGAATTGGTCAAATGAAAGATGTTCTGGTATATAAGGGAGGATTATTCAAAACTGCTACTGAACATAAAGAACAGATTCGGTACTTTAGCCAGCAGGATCTTAGGGAGCTTTTCAGCCTTCCAAGAGAAGGATTTGATGTATCTGTTACCCAAAGGCAATTGAATGAGGAGCACGATCGTCAACATACAATTGATGACTCTTTCAAAGCACATATAGAGTTCTTGAAAAGTCAAGGCATAGCTGGAGTTAGTCACCACAGTTTACTATTTTCCAAGACAGCACCAGTTCGAGCTGATCCTGAGGATGATGAAGTTACAAGGAATCATGGGACTAAATATATTGGAACTGGAACTTCAAGATCATCTTCAAATGAGCATGTTGCTTATGGGTCCGAGTTTGCATTTAATCCCAAGGATGTTAGGACAAGCAGAAAAGGTTATTCTCCTGGCAGTGCTGGTAAATTGAGCGAGTCAGAAATCAAGGATAAAATAAAGCGTATCTCTCAAACACTCTCAAATGCGGCAATGATTTCAAAATTGCCTGACAAGGGCGAGAAACTAGAAAAACGGCTTGCGGAGTTGAATTTAGAGCTGGCTGAGCTGAAGAAGGAAGTGGAAGTGGTTGATTTAGATGATTTTACTACTCAATTTCAACGGGTGTTGAATGTATAG 3072 0.4209 MANNRSTKKPMSLNDNHYRFLQEHSAAPKSSSKHTFDEESIEVSIRKHQHQHQNIPQFSAITDFDSPPFGLNSDEKQQQAPSNDIPQFSLNSTPRQNSDEKHEPIKFHDDDEEEEEEARLNDIPQFSFISQNSDVKHDPIKFHDDDEEEEEEAPPVVVNFPPKEEKKTKVKVQGRRRLCKVVHEDAGKSAADDESKFDELIDLDSPIPAPREVIQIEESGGKNEIRDILNELNSKFELLSVERKPKPKLVGGLVGGKESCDDEGSEFGSAGSSFSPEQGSLSEGTKDSGGGGIEYDSDDSVQVLDHSEPVSDGSITLTGPRSTFKLQPKIAKMLYPHQREGLKWLWSLHCLGKGGILGDDMGLGKTMQICGFLAGLFHSRLIRRALVVAPKTLLPHWIKELAVVGLSEKTREYFATSAKLREYELQYILQDKGVLLTTYDIVRNNFKSLQGGNYFDDEDNEDGATWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPLQNNLKELWALFNFSCPELLGDHKWFKERFEMPILRGNDKHASDRDKRVGSSVAKELRDRIQPYFLRRLKSEVFSQDSEETTAKLSQKQEIIVWLRLTSVQRHLYEAFLKSEIVLSAFDGSPLAALTILKKICDHPLLLTKRAAEDLLEGMDSMLKPEEANLAEKMAMHIADVAGTDKFKDEQDVSCKISFIMSLLDNLIPEGHCVLIFSQTRKMLNLIQECLISEGYDFLRIDGTTKPSDRLKIVNDFQEGAGAPIFLLTSQVGGLGLTLTRADRVIVVDPAWNPSMDNQSVDRAYRIGQMKDVLVYKGGLFKTATEHKEQIRYFSQQDLRELFSLPREGFDVSVTQRQLNEEHDRQHTIDDSFKAHIEFLKSQGIAGVSHHSLLFSKTAPVRADPEDDEVTRNHGTKYIGTGTSRSSSNEHVAYGSEFAFNPKDVRTSRKGYSPGSAGKLSESEIKDKIKRISQTLSNAAMISKLPDKGEKLEKRLAELNLELAELKKEVEVVDLDDFTTQFQRVLNV 1023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2146 1023 MobiDBLite consensus disorder prediction 266 285 - -
Aed5g2146 1023 MobiDBLite consensus disorder prediction 184 204 - -
Aed5g2146 1023 Pfam Helicase conserved C-terminal domain 691 803 IPR001650 -
Aed5g2146 1023 Pfam SNF2-related domain 337 641 IPR000330 GO:0005524|GO:0140658
Aed5g2146 1023 MobiDBLite consensus disorder prediction 1 156 - -
Aed5g2146 1023 CDD SF2_C_SNF 683 812 - -
Aed5g2146 1023 Gene3D - 313 570 IPR038718 -
Aed5g2146 1023 SMART ultradead3 329 532 IPR014001 -
Aed5g2146 1023 MobiDBLite consensus disorder prediction 71 95 - -
Aed5g2146 1023 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 346 521 IPR014001 -
Aed5g2146 1023 MobiDBLite consensus disorder prediction 899 923 - -
Aed5g2146 1023 Gene3D - 590 872 IPR027417 -
Aed5g2146 1023 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 587 856 IPR027417 -
Aed5g2146 1023 MobiDBLite consensus disorder prediction 252 298 - -
Aed5g2146 1023 PANTHER OS04G0692700 PROTEIN 311 899 - -
Aed5g2146 1023 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 324 571 IPR027417 -
Aed5g2146 1023 Coils Coil 984 1011 - -
Aed5g2146 1023 MobiDBLite consensus disorder prediction 30 49 - -
Aed5g2146 1023 PANTHER SNF2/RAD54 FAMILY MEMBER 311 899 - -
Aed5g2146 1023 SMART helicmild6 720 803 IPR001650 -
Aed5g2146 1023 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 694 853 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2146 Aed-Chr5 23662982 23675397 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2146 334 821 RAD5 or RAD16-like Gene Family AT1G02670 24.242 7.07e-30 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Aed5g2146 SNF2_N 9.3e-49 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2146 K20093 - gmx:100779283 1678.69