Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2142 ATGGGAGATGAGAACCATGGCAGCACTTTGGCAAACGGATTCAACACAGGAAGCCCCGAAAGCCTTTGCTTAAAGACGACGACGACGACAACAACATTATTAAGCAACGGCAACCACAACCACAACAACAAAGAACAGGACCGGTTCCTCCCCATAGCGAACGTGGGAAGAATAATGAAAAAAGTGATTCCCCCGAACGGGAAAATCTCAAAGGACGCCAAAGAGACAGTTCAAGAATGCGTGTCGGAGTTCATAAGCTTCGTGACCGGTGAAGCTTCCGACAAATGCCAAAGGGAAAAGAGAAAGACAATCAACGGTGACGATGTCATATGGGCCATCACAACCCTAGGATTCGAGGATTACGTCGAGCCCTTGAAAACTTACCTCCAGAAATATAAAGACATTGAAGGAGAAAAACTTAACATTCCAAAGCAACTACGCTCTGAACAAAGGCTACAACAACAACAACAACAACACCAACACCATATTAATATTAATAATCATAACCATGATGAAAATAATCAACCATTTAATGCTTCTGCATATAGTCATGCCTCGTCGAATCAGTTCATCTCTCAGCCTCCTTCTTATGTGCAATCAACCACTGATCAGAAGTTCTCACTTCCCTTTTCTCCAAACTCCATTCAGAATCAGCTACGGCAGCAGGACCAGATTGATTCGGTGGACCACCAAGCTTTTTATATGTAA 708 0.4336 MGDENHGSTLANGFNTGSPESLCLKTTTTTTTLLSNGNHNHNNKEQDRFLPIANVGRIMKKVIPPNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDVIWAITTLGFEDYVEPLKTYLQKYKDIEGEKLNIPKQLRSEQRLQQQQQQHQHHININNHNHDENNQPFNASAYSHASSNQFISQPPSYVQSTTDQKFSLPFSPNSIQNQLRQQDQIDSVDHQAFYM 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2142 235 PRINTS CCAAT-binding transcription factor subunit A signature 115 133 - -
Aed5g2142 235 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
Aed5g2142 235 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
Aed5g2142 235 SUPERFAMILY Histone-fold 46 171 IPR009072 GO:0046982
Aed5g2142 235 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 226 IPR027113 GO:0001228|GO:0006355|GO:0016602
Aed5g2142 235 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-7 1 226 - -
Aed5g2142 235 MobiDBLite consensus disorder prediction 166 212 - -
Aed5g2142 235 ProSitePatterns NF-YB/HAP3 subunit signature. 80 96 IPR003956 GO:0005634|GO:0006355|GO:0043565
Aed5g2142 235 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 49 113 IPR003958 -
Aed5g2142 235 Gene3D Histone, subunit A 37 179 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2142 Aed-Chr5 23642258 23642965 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2142 3 228 CCAAT-HAP3 Transcription Factor Family AT2G13570 57.391 8.06e-69 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Aed5g2142 CBFD_NFYB_HMF 7.5e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2142 K08065 - gmx:100778216 328.176