Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2133 ATGGCTTGTGGAAGTGTGAACAATAACCAGCTGCAGCTTCCTCCTGGTTTTAGCTTCTCTCCAAGTGATGAAGAATTGGTCCTTCACTTTCTTTATTCCAAGGCTTCTCTACCTGCATCCCATCCCAACATCATTCCAGAGCTTGACCTTTCTCTGCTTTATCCATGGGAATTAACTGGTATATATATATATATATATACTCATACTCATTGGTATATGATCAATTTTTCAATATATATAATAACTATATGCATGGATCAAATTAACTACTTATTTAATTATATAATAATAGGTAAAGCGTTGTCAAGTGGAAATCAACACTATTTCTTCACGAAAGTAGTGAAGGAAAAGAGATCCTCAACAGAGAATGGGTATTGGAAGGAAATAGGAGTCACAGAACCGATAGTATCCGGTTCTGAAAAAGTGGGGATGAAGAAGTACCTTGTGTTCAACGCTGGCGGCACGACTACTGCTGAAACCACTTGGCTCATGCAACAATATCATATTTGCGGAAGACGAAAATCTGATGAATATTGTAGGAGCAAATGGGTATTGTGCAAAGCCTATGAAAAGAAAAGTTACGGCGATGATGAGGATCATCACAGTACTGGAACCGAGCTTTCATGGCTAGACGAATTCTATATGTCGTTAGATGATGATGATGATGATGATCCTGAAGAAGTTATAAGCCTTCCTATGTCTAATTAG 708 0.3799 MACGSVNNNQLQLPPGFSFSPSDEELVLHFLYSKASLPASHPNIIPELDLSLLYPWELTGIYIYIYTHTHWYMINFSIYIITICMDQINYLFNYIIIGKALSSGNQHYFFTKVVKEKRSSTENGYWKEIGVTEPIVSGSEKVGMKKYLVFNAGGTTTAETTWLMQQYHICGRRKSDEYCRSKWVLCKAYEKKSYGDDEDHHSTGTELSWLDEFYMSLDDDDDDDPEEVISLPMSN 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2133 235 Gene3D NAC domain 22 195 IPR036093 GO:0003677|GO:0006355
Aed5g2133 235 ProSiteProfiles NAC domain profile. 13 191 IPR003441 GO:0003677|GO:0006355
Aed5g2133 235 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 9 61 - -
Aed5g2133 235 MobiDBLite consensus disorder prediction 216 235 - -
Aed5g2133 235 SUPERFAMILY NAC domain 96 191 IPR036093 GO:0003677|GO:0006355
Aed5g2133 235 PANTHER NAC TRANSCRIPTION FACTOR 56 96 225 - -
Aed5g2133 235 PANTHER NAC TRANSCRIPTION FACTOR 56 9 61 - -
Aed5g2133 235 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 96 225 - -
Aed5g2133 235 SUPERFAMILY NAC domain 6 74 IPR036093 GO:0003677|GO:0006355
Aed5g2133 235 Pfam No apical meristem (NAM) protein 14 169 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2133 Aed-Chr5 23584089 23585306 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2133 11 192 NAC Transcription Factor Family AT1G01720 34.043 2.88e-22 90.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Aed5g2133 NAM 8.3e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2133 - - gmx:100779578 241.891
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g2133 5 23584089 23585306 Aed5g2133 5 23584089 23585306 ECH