Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2128 ATGAGCGAATCTCAAAACACCATTCCCCACTTATTCAGATGCCCCATCAGTTTAGACTTGTTGGAAGATCCTGTAACTTTATCCACAGGCCAAACCTATGACAGATCAAACATAGAAAAATGGCTTGCAGCAGGTAACCTCACATGTCCAGTCACAATGCAAAAGCTTCATGATCCATCCATTGTTCCCAACCACACTCTTCGCCACTTGATCGATCAGTGGCTTCAACTACTGGGTCCCCAATTTGACCCTGCTAACCCTCAAGCTTCAACTATTCACTCCTTAGCTTCTCTGAAACGAATCCTTGAATCCCATGACGATGAAACCAGCTTAGAAAACAAACTCCAAGCACTTGGGAAAATCAGTCTCTTACCTGATGAGTATTACTCCTTTAACAAATCATGCTTCCTCCAACTGGATTTCCTACCACTGCTTTTGGAACTAGTTTTTGAAACTCATCAAGTGTCTTCAAATTCAAAACATGACATGAACTTCATCGAGCTAGCACTTTGTTGCATTCTGAAATTGCTGCCACTTGGTACTTTGGAGCCTCTAAATATGATCAAAGATGGGTCTAAATTAGCCACGTTTGTGCTACTATTTGAAAAGGGTACTAACTCGATCAAGACTAGCTTGTGCCGTGTTATAGAGTCAGCATCGTCGTCGTCATCTCAGACAGAAGATTTATGTTCTACTCTTGGAAACTGTCACAAACTAGTGCACGAGATTGTTCATGTTGTTAACCACAATTACGAGGTTTCTGGGGATGCAATTAAGGCCATGTCAGCACTGTGTTCGTTGGAATCCAACAGAGAGAGTTTTGTGAGAGGAGGAGCAATAGAAGAAATAATGAGATACATTACATCAGATAGAAGAAACTTGGCAGCGGTTGCAATGAGAATAGTAGAGAAACTTATGGGGCTGAAAAGTGGTAAAGAGGCATTGGTTAATCACCCTAATGGTGTTCAAATTTTGGTGAATATGGTATTCAGAGTATCTGATCAAGAATGCAGTGAGAGTGCTGTTGAAGTGCTTTTAACTGTTTGTGGTGAGTTTGGGCGTGCAAGAGAGGAAGCCATTGAGAGTGGAATTTTGACTCGGCTACTGTTGCTTCTGCAGAGTCAGTGCAATAACACAACAAAATCAAAAGCAAGAATGCTACTCAAATTGCTAAGATCAGAGTCCGAGCCAAAACAGGGTTAG 1203 0.4165 MSESQNTIPHLFRCPISLDLLEDPVTLSTGQTYDRSNIEKWLAAGNLTCPVTMQKLHDPSIVPNHTLRHLIDQWLQLLGPQFDPANPQASTIHSLASLKRILESHDDETSLENKLQALGKISLLPDEYYSFNKSCFLQLDFLPLLLELVFETHQVSSNSKHDMNFIELALCCILKLLPLGTLEPLNMIKDGSKLATFVLLFEKGTNSIKTSLCRVIESASSSSSQTEDLCSTLGNCHKLVHEIVHVVNHNYEVSGDAIKAMSALCSLESNRESFVRGGAIEEIMRYITSDRRNLAAVAMRIVEKLMGLKSGKEALVNHPNGVQILVNMVFRVSDQECSESAVEVLLTVCGEFGRAREEAIESGILTRLLLLLQSQCNNTTKSKARMLLKLLRSESEPKQG 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2128 400 Pfam U-box domain 8 76 IPR003613 GO:0004842|GO:0016567
Aed5g2128 400 SUPERFAMILY ARM repeat 97 392 IPR016024 -
Aed5g2128 400 PANTHER OS02G0542800 PROTEIN 7 393 - -
Aed5g2128 400 SUPERFAMILY RING/U-box 3 76 - -
Aed5g2128 400 Gene3D - 85 305 IPR011989 -
Aed5g2128 400 ProSiteProfiles U-box domain profile. 7 81 IPR003613 GO:0004842|GO:0016567
Aed5g2128 400 CDD RING-Ubox_PUB 12 54 IPR045210 -
Aed5g2128 400 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 79 IPR013083 -
Aed5g2128 400 PANTHER WDSAM1 PROTEIN 7 393 IPR045185 GO:0061630
Aed5g2128 400 Gene3D - 312 399 IPR011989 -
Aed5g2128 400 SMART Ubox_2 11 74 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2128 Aed-Chr5 23569466 23570668 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2128 8 377 U-box Gene Family AT3G19380 30.311 4.19e-40 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2128 - - gmx:100805322 601.668
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g2128 5 23569466 23570668 Aed5g2128 5 23569466 23570668 ECH