Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2127 ATGCCGGCTTGGTGGAGTAGAAAGTGGAGCAAGAGCAAAGAGGAGCACGAGGAGGATGAGGAGGAAGAGCCACGTGCCGGTTTTCAATTGAATTTCATGAAATCTCCGGTTACCGTTAGGGACAAGAGCAAGACGAAGAAGAAGAATAAGCCCAAGAGCTTCGACGAGAAGGCCGTGAAGGGGGTTCCGTTACCTCGTCCGATGCACAGTCACAGCGATCCAAATCAAACATTTGGATCTGTTTCGGTGTCGGGTTCCAGCGTCAGCTCCTCCACCTCCTTCGACGATAATCCAATTTCGCCTCACTTTAATTCCAACACCAACAGAGGACAAGACGAGGTGAGGTTCAATGTGAGGTCAAAAAGTCCGGGTCCTGGGTCAAGAGGACCAACCAGTCCTACCTCACCACTTCATCAAAGGTTGCATGCTTTGAGTCTTGACTCTCCTACGGGGAGTGAGTGTCATCCATTACCTCTTCCACCTGGCTCTCCAACTAGTCCTTCTTCTGTGCTTTCCAACGCACGAGCAAATGGACTGTTGGAAAATGCAACCAACAATAATGTGTATTCTCGCCCCAATGTTCATATTCTGGACAGATTACTGAAACCATTTTCTATTCTGCTTCCTTTGTTTGACAGTGAAAATGGACAAATGTGTGCAATAAAAGAAGTCAAGGTTGTATCTGATGATCAAACATCAAGAGAGTGCCTCAAACAACTTAATCAGGAGATAAATTTGCTAAATCATCTTTCACACCCTAATATTGTTCAATACTACGGGAGTGAACTGGTAGAAGAATCACTTTCTGTATATTTGGAATATGTCTCTGGTGGTTCTATCCATAAATTACTTCAGGAGTATGGTCCATTTACGGAGCGCATTATTCAAAATTATACCCGGCAGATTGTCTCTGGACTTGCCTATCTGCATGGAAGAAATACAGTACACAGAGATATTAAAGGGGCAAACATACTAGTTGATCCTAATGGTGAAATCAAACTGGCAGACTTTGGAATGGCTAAACATATAAATTCTTCTGTCTCGATGCTTTCATTCAAAGGAAGTCCATACTGGATGGCACCTGAGGTTGTAATGAATACAAATGGCTATAGTCTTCCAGTTGACATATGGAGCTTGGGATGCACAATTATTGAAATGGCATCATCAAAACCTCCATGGAGTCAGTATGAAGGGGTAGCTGCCATATTTAAAATTGGGAACAGCAAAGATATGCCTGAAATCCCCGAGCATCTTTCGAATGATGCAAAGAATTTCATCAAGCTATGCTTACAAAGAGACCCATTAGATCGCCCAACAGCCCAAAAGTTACTAGACCACCTCTTCATTCGAGATCAATCAGCAACAAAAGCTGCAAATGTCAGCATAACCAGAGATGCTTTCCCTTACATGTGTGATGGAAGCCGAACCCCACCGCCTGTGTTAGAGTCCCATTCCAACAGAACAAGTATAACTTCTCTTGAAGGAGATTATGCATCAAAACCAGCTCTTGCAGCTCCACGTGCATTAAGGAGTCCAAGAGACAACATAAGAATGATCACATCTTTACCGGTGTCTCCCTCTTCAAGTCCATTGCGACGGTACAGACCAACGCATCAGAGCTGTTTTTATTCTCCTCCTCATCCGGCTTACACAATGATGGGACAAAGTAGTTACACTTTGAATGACGCATCCTCATCATATCCAACAAGATCAAATGCCACGTTTGCTCTTGATCCTTGGCATGAAACATCTCGATACAGAGCCAATACACCACCTGGTGGATCTCCTAGAATGAGACTCATCACAAACTATCCAAAACATTCTGTTGGTCTATTCTTTATACATGAGAACCAGATGACGGAAGAAATGATTCTGGCCCCATGCGAGTTGAGTGCGATGGATTCGAGTTCGGGGCATCAAGAATTCGATTATTTGTTTAAGTTGTTGATGATTGGAGATTCTGGGGTTGGCAAGAGTAGTCTTCTGCTCAGTTTCACCAACGATGCTTTTGAAGATCTCTCCCCCACTATTGGTGTTGATTTTAAGGTCAAATATGTGACGGTGGGGGGTAAAAAGCTGAAGCTTGCAATCTGGGATACTGGAGGGTGGTCCTTCCAAGTTAATGTAGTGTTGAAATTTGACTTTGGATTAGCTGCTGATTTTGTTCCTCTAACTAATGCAGTTTATGATGTAACCCGGCGAGATACATTTACAAATCTTTCTGAAATATGGGCAAAGGAAATAGACCTTTATTCAACTAATCAAGATTGCATCAAGATGCTTGTTGGAAACAAAGTAGACAAGGAGGGTGATAGAGTTGTGACAAAGAAAGAGGCAATAGACTTCGCCAGGGAATCTGGTTGCCTGTTTATTGAATGCAGTGCTAAAACTCGAGTTAACGTTCAGCAATGCTTTGAAGAGCTTGTTTTGAAGATTCTGGATACACCTAACCTCTTAGCCGAGGGCTCAAAGGGTGTTAAAAAGAACATTTTTAAGGACAGGCCACCACAGTCTGATGCATCCACAAGTGGTTGTTGCTGA 2541 0.4313 MPAWWSRKWSKSKEEHEEDEEEEPRAGFQLNFMKSPVTVRDKSKTKKKNKPKSFDEKAVKGVPLPRPMHSHSDPNQTFGSVSVSGSSVSSSTSFDDNPISPHFNSNTNRGQDEVRFNVRSKSPGPGSRGPTSPTSPLHQRLHALSLDSPTGSECHPLPLPPGSPTSPSSVLSNARANGLLENATNNNVYSRPNVHILDRLLKPFSILLPLFDSENGQMCAIKEVKVVSDDQTSRECLKQLNQEINLLNHLSHPNIVQYYGSELVEESLSVYLEYVSGGSIHKLLQEYGPFTERIIQNYTRQIVSGLAYLHGRNTVHRDIKGANILVDPNGEIKLADFGMAKHINSSVSMLSFKGSPYWMAPEVVMNTNGYSLPVDIWSLGCTIIEMASSKPPWSQYEGVAAIFKIGNSKDMPEIPEHLSNDAKNFIKLCLQRDPLDRPTAQKLLDHLFIRDQSATKAANVSITRDAFPYMCDGSRTPPPVLESHSNRTSITSLEGDYASKPALAAPRALRSPRDNIRMITSLPVSPSSSPLRRYRPTHQSCFYSPPHPAYTMMGQSSYTLNDASSSYPTRSNATFALDPWHETSRYRANTPPGGSPRMRLITNYPKHSVGLFFIHENQMTEEMILAPCELSAMDSSSGHQEFDYLFKLLMIGDSGVGKSSLLLSFTNDAFEDLSPTIGVDFKVKYVTVGGKKLKLAIWDTGGWSFQVNVVLKFDFGLAADFVPLTNAVYDVTRRDTFTNLSEIWAKEIDLYSTNQDCIKMLVGNKVDKEGDRVVTKKEAIDFARESGCLFIECSAKTRVNVQQCFEELVLKILDTPNLLAEGSKGVKKNIFKDRPPQSDASTSGCC 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2127 846 ProSiteProfiles small GTPase Rab1 family profile. 641 846 - -
Aed5g2127 846 SMART serkin_6 204 449 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed5g2127 846 Pfam Ras family 647 813 IPR001806 GO:0003924|GO:0005525
Aed5g2127 846 TIGRFAM small_GTP: small GTP-binding protein domain 644 807 IPR005225 GO:0005525
Aed5g2127 846 ProSiteProfiles small GTPase Ras family profile. 641 846 IPR001806 GO:0003924|GO:0005525
Aed5g2127 846 SMART rho_sub_3 648 815 IPR001806 GO:0003924|GO:0005525
Aed5g2127 846 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 641 818 IPR027417 -
Aed5g2127 846 Pfam Protein kinase domain 211 449 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed5g2127 846 SMART rab_sub_5 646 815 - -
Aed5g2127 846 PRINTS Transforming protein P21 ras signature 646 667 - -
Aed5g2127 846 PRINTS Transforming protein P21 ras signature 668 684 - -
Aed5g2127 846 PRINTS Transforming protein P21 ras signature 755 768 - -
Aed5g2127 846 PRINTS Transforming protein P21 ras signature 686 708 - -
Aed5g2127 846 PRINTS Transforming protein P21 ras signature 790 812 - -
Aed5g2127 846 MobiDBLite consensus disorder prediction 70 113 - -
Aed5g2127 846 Gene3D Transferase(Phosphotransferase) domain 1 207 469 - -
Aed5g2127 846 Gene3D - 639 846 IPR027417 -
Aed5g2127 846 SMART ras_sub_4 643 815 - -
Aed5g2127 846 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 1 582 - -
Aed5g2127 846 MobiDBLite consensus disorder prediction 124 141 - -
Aed5g2127 846 ProSiteProfiles Protein kinase domain profile. 174 449 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed5g2127 846 PANTHER MAP KINASE KINASE KINASE 1 582 - -
Aed5g2127 846 SUPERFAMILY Protein kinase-like (PK-like) 212 535 IPR011009 -
Aed5g2127 846 MobiDBLite consensus disorder prediction 1 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2127 Aed-Chr5 23554856 23565427 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2127 1 513 MAP Kinase Kinase Kinase AT1G53570 52.212 3.55e-161 478
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Aed5g2127 Pkinase 2.8e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2127 K04421 - gmx:100787064 888.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g2127 5 23554856 23565427 Aed10g0666 10 5387619 5389469 PCT