Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2116 ATGGACACCAACACTAGTGCATTCACAAATGTGAACAGCAGTACTTGGATTAATCTTGAAAAGATGGAAACAAATGAACAACAACAACAACAACAACATGTCGACCATAATATTATTCTCCAAGTCCAAGACCCTCCTATCATGGGTTCTGGGATTTGGCCCAATAACTACCACAACCTTGTTCAAATGCATCAATTAACACTACCCAACACAACAACCTCGTCGACATCAGGGTTCCTCGGAGACATACTAGGTGTTCAGAACATAGAAGAAGATCATGAAGAGGCAGAAGAGGAAGAAGAAGAGCTAGGAGCCATGAAGGAGATGATGTACAAGATCGCTGCTATGCAACCCGTGGACATCGACCCCGCCACCATCCGAAAACCAAAGAGAAGAAACGTTCGCATCAGCGAAGACCCTCAGAGCGTAGCTGCACGCCACAGGAGAGAGAGGATCAGCGAAAAAATCCGCATCCTCCAAAGACTCGTTCCCGGAGGAACCAAAATGGACACTGCTTCAATGCTTGATGAAGCCATTCGCTATGTCAAGTTCTTGAAGAGACAAATCAGGATGCTTCAATCCATTCCTCACCCTAATAATTCAAACCCACTAGTACCACAATGCAATCACGGTAGCACCTTGTTGTTAGCCCCTTCTTGTGATTGGCCTTTTGCACCAAATGTGTTACCCATGATAAGTTCCACTGCCGTCACCATTACCGCCACCACCACCGCCACCATCTCTATGGACATGCCGGCCAGACTCGGATTCGACGCCCATGGTCATGCTTGTGATGGCTCCTCCTCCAGCTTTAACCATCATGAGGTAATCAGTGAATAA 840 0.4667 MDTNTSAFTNVNSSTWINLEKMETNEQQQQQQHVDHNIILQVQDPPIMGSGIWPNNYHNLVQMHQLTLPNTTTSSTSGFLGDILGVQNIEEDHEEAEEEEEELGAMKEMMYKIAAMQPVDIDPATIRKPKRRNVRISEDPQSVAARHRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRMLQSIPHPNNSNPLVPQCNHGSTLLLAPSCDWPFAPNVLPMISSTAVTITATTTATISMDMPARLGFDAHGHACDGSSSSFNHHEVISE 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2116 279 Coils Coil 86 109 - -
Aed5g2116 279 CDD bHLH_AtIND_like 137 194 - -
Aed5g2116 279 Gene3D - 139 200 IPR036638 GO:0046983
Aed5g2116 279 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 136 185 IPR011598 GO:0046983
Aed5g2116 279 Pfam Helix-loop-helix DNA-binding domain 146 185 IPR011598 GO:0046983
Aed5g2116 279 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 141 195 IPR036638 GO:0046983
Aed5g2116 279 SMART finulus 142 191 IPR011598 GO:0046983
Aed5g2116 279 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 18 262 IPR045843 GO:0003700|GO:0006355
Aed5g2116 279 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 18 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2116 Aed-Chr5 23472385 23473224 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2116 105 205 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00120 75.248 5.62e-47 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aed5g2116 HLH 1.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2116 - - gmx:100775296 374.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g2116 5 23472385 23473224 Aed5g2116 5 23472385 23473224 ECH