Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2115 ATGAGAGTTGGAGGAGGAAGAGGAGGAGGAGAACGATTATGCAGATACTTTGCTTTAGGGAAATGCTACAGAGGAAACCATTGTCGTTTCCTCCACCAATATCAGAAGAATCAGAACAATTTCGAGCAAGGTGCTCGTCCACATGCTATAAATCAGAATGATTCAGCTGTTGTTTTTGGAACACCATTTTCAAGTGATATGAAGGAATCTAATTGGACAACAAAAAACGTTGATGCTGCTGCCAATGTTCATACTTCCCAGCCAGTAATGCCAGTAAGCGTAGACAATTTGCCTGATAATGAAAAAATGTCTCCTCCTAATTGGAATCATGGTTCGAGATCTTCCAGCCATATTAGCAAAGAGCAACAAGTTCCTCCATGTAACTACAGGCTTAATATTCCTCTGCATCATTGTCCACTGAAGAAGCGTGATCCAAGATGTTTTTGTAAGTTGCCAAAGAATGATAATGCAAATGAATCAGCAGAGGGACAACTTGTGAAGAATGAACATTCAGTTCAGTTGCAGAAAGGTGAGAATGTTGAGGTTGATGAAGAGAGCACAGTGGGTGAATCCGGAACAATATTTTCAAATTTGTATTAA 600 0.3983 MRVGGGRGGGERLCRYFALGKCYRGNHCRFLHQYQKNQNNFEQGARPHAINQNDSAVVFGTPFSSDMKESNWTTKNVDAAANVHTSQPVMPVSVDNLPDNEKMSPPNWNHGSRSSSHISKEQQVPPCNYRLNIPLHHCPLKKRDPRCFCKLPKNDNANESAEGQLVKNEHSVQLQKGENVEVDEESTVGESGTIFSNLY 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2115 199 Pfam CCCH-type zinc finger 12 32 IPR041367 -
Aed5g2115 199 Gene3D - 6 78 - -
Aed5g2115 199 ProSiteProfiles Zinc finger C3H1-type profile. 8 35 IPR000571 GO:0046872
Aed5g2115 199 SUPERFAMILY CCCH zinc finger 11 33 IPR036855 GO:0046872
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aed5g2115 zf-CCCH_4 1.1e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2115 - K15687 gmx:102670057 102.064