Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2107 ATGCTGTGCTCTGATGATGGAGATATCGATGAGTTCTTTGACTCAGTGGATAGTTTGTTAGCCAAAGAAGAGTTTGGTTCTGAAAGGTGTGGTTATGACGAAATTTGGGTGAAGGAGCCTGTTAGTGTGAAGGAGAGGAGGGAACTCTTTCTGCAGGGTTTGGGTTTGGCTGATGCTTCTTTTTCCAAGGTTTGTTCACAAGAGAAAATGAGTTTGGGATTGGAGAGGATCAGGGAGTGCAGTGGGGCAATTTCAAATGCTTGCATTTTGCATACTGATCAAGTAGTATCTGAGATAGGCAAAGCAGCTTCTGAAGAAAAAGTCTCTTTGGATGAAGTGAAAGGGTGTCCCCAAGATGAAGCAGATGCAATCTTCCAAGGGAAAGTACATCATGAGTTCTCTGCTACAGCAGAGGAGCACAGACCCAGAGAAGCTGATTCACAAGAAGAATTTCAGGATTTTGATATGAGTAAGAGAAAGAGGAAAAACTGGTGGAAGCGCTTTGTGAACATCAGGAAAGGTGGTGAAGGAAATGTAAGATCCAAATTGAATGCAGGGACAAACAAAACTAGAAGAATAAAGGTGAGGCAGAATAAAAAGAGGTGGCTGGAGTTCAGTGGCCTATACCTTGGACAAGAGGTTAGAGCACACAAAGGCCTAATCTGGACCATGAAATTTAGTCCCTGTGGTCAGTATTTAGCAAGTGGAGGTGAGGATGGTGTTGTTCGCATATGGCGTGTTACATCACTGGATAAATCCAGTATTTGTTTCACCACAGAAGAAGACAGTACTTCTAATACCAAAGTGGAATGTGACAACTCTTCTCCTCGGAAGAAACACTCAAGCCAACCCTTCATTTTCCTTCCAAATAGTATTTTTCAAATTGAGGAATCACCACTGCAAGAATTCTTTGGTCATTTCAGTGATGTCTTGGATTTGGCTTGGTCTAATTCAGATGTTATCCTTTCATCTTCTATGGACAAGACTGTTCGCTTGTGGCAAATTGGTTGCAATGAATGTCTAAATGTTTTCCATCACAATGACTATGCAGTGACATGCATTCAATTCAACCCTGTTGATGAAAATTACTTCATTAGTGGATCCATTGATGGTAAGGTTCGAATATGGGGGATATGTGAAGAACGAGTTATTGATTGGGCTGATATACGAGATGTCATAAGTGCTATAAGTTACCAGCAAGATGGGAAAGGATTTGTAGTTGGTTCTGTTACAGGCACTTGTCGTTTTTATGTTGCTTCAGGAACATATTTCCAGCTTGAGGCACAGATAGATGTCCATGGAAAGAAGAAAGCGTCAGGCAACAAGATTACCGGCATTCAGTTCTCCCAAAAGAAGAGTCAGAGAATAATGATCACATCAGAAGATTCTAAAATTTGTATATTTGATGGCATTGAGCTTGTTCAGAAATACAAAGGTCTTCCAAAGTCAGGAAGTCAGGTGTCTGGTTCATTTACATCAAGTGGAAAACATATAGTCTCAGTTGGAGAGGACTCCCATGTATATATTTGGAACTTCGATGACATGGGAAATGCTGCTTCTTCGAAACAGACGAAATCCGAACGCTCCTGTGAGTACTTTTCCTCTAAAGGTGTTACTGTTGCAACAGCAATACCTTGGTCAGGCTCAGGCATGAAACCTGGTAATTATTCTCACCCAACCCAACAACAACAGCCAGAGGAACGTTTTTCTCTTGGTAATTGGTTTGCCATCGATGGCACGTGTCGAGGTTCTACGACTTGGCCTGAGGAGAAACTTCCTATAGCAGAAGATGATGAATATGACAGAAGTGTATCAGAAACATGGGGACTATCTATTGTGGCAGCTGGTTGTGATGGAACTATCAAGACATTCCACAATTTTGGATTGCCCGTTAGGCTTTAA 1902 0.4159 MLCSDDGDIDEFFDSVDSLLAKEEFGSERCGYDEIWVKEPVSVKERRELFLQGLGLADASFSKVCSQEKMSLGLERIRECSGAISNACILHTDQVVSEIGKAASEEKVSLDEVKGCPQDEADAIFQGKVHHEFSATAEEHRPREADSQEEFQDFDMSKRKRKNWWKRFVNIRKGGEGNVRSKLNAGTNKTRRIKVRQNKKRWLEFSGLYLGQEVRAHKGLIWTMKFSPCGQYLASGGEDGVVRIWRVTSLDKSSICFTTEEDSTSNTKVECDNSSPRKKHSSQPFIFLPNSIFQIEESPLQEFFGHFSDVLDLAWSNSDVILSSSMDKTVRLWQIGCNECLNVFHHNDYAVTCIQFNPVDENYFISGSIDGKVRIWGICEERVIDWADIRDVISAISYQQDGKGFVVGSVTGTCRFYVASGTYFQLEAQIDVHGKKKASGNKITGIQFSQKKSQRIMITSEDSKICIFDGIELVQKYKGLPKSGSQVSGSFTSSGKHIVSVGEDSHVYIWNFDDMGNAASSKQTKSERSCEYFSSKGVTVATAIPWSGSGMKPGNYSHPTQQQQPEERFSLGNWFAIDGTCRGSTTWPEEKLPIAEDDEYDRSVSETWGLSIVAAGCDGTIKTFHNFGLPVRL 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2107 633 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 214 249 - -
Aed5g2107 633 ProSiteProfiles Trp-Asp (WD) repeats profile. 214 255 IPR001680 GO:0005515
Aed5g2107 633 ProSiteProfiles Trp-Asp (WD) repeats profile. 344 376 IPR001680 GO:0005515
Aed5g2107 633 Pfam WD domain, G-beta repeat 298 333 IPR001680 GO:0005515
Aed5g2107 633 Pfam WD domain, G-beta repeat 213 245 IPR001680 GO:0005515
Aed5g2107 633 Pfam WD domain, G-beta repeat 339 376 IPR001680 GO:0005515
Aed5g2107 633 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 344 376 - -
Aed5g2107 633 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 303 335 - -
Aed5g2107 633 ProSiteProfiles Trp-Asp (WD) repeats profile. 303 343 IPR001680 GO:0005515
Aed5g2107 633 PRINTS G protein beta WD-40 repeat signature 233 247 IPR020472 -
Aed5g2107 633 PRINTS G protein beta WD-40 repeat signature 321 335 IPR020472 -
Aed5g2107 633 PRINTS G protein beta WD-40 repeat signature 364 378 IPR020472 -
Aed5g2107 633 PANTHER WD REPEAT DOMAIN 44 1 633 IPR040324 -
Aed5g2107 633 SMART WD40_4 337 377 IPR001680 GO:0005515
Aed5g2107 633 SMART WD40_4 429 469 IPR001680 GO:0005515
Aed5g2107 633 SMART WD40_4 379 418 IPR001680 GO:0005515
Aed5g2107 633 SMART WD40_4 296 334 IPR001680 GO:0005515
Aed5g2107 633 SMART WD40_4 207 246 IPR001680 GO:0005515
Aed5g2107 633 SMART WD40_4 470 511 IPR001680 GO:0005515
Aed5g2107 633 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 1 633 - -
Aed5g2107 633 Gene3D - 389 626 IPR015943 GO:0005515
Aed5g2107 633 Gene3D - 120 388 IPR015943 GO:0005515
Aed5g2107 633 SUPERFAMILY WD40 repeat-like 208 543 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2107 Aed-Chr5 23415546 23419624 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2107 K20241 - gmx:100819135 1085.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g2107 5 23415546 23419624 Aed5g2107 5 23415546 23419624 ECH
Aed5g2107 5 23415546 23419624 Aed10g0643 10 5177750 5181793 PCT