Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2106 ATGGTTAGAGACGATCTATACATCCCCGTTCCCAGCTTCTTCCGGTGCCCTATATCCCTCGACGTCATGAAATCCCCTGTCAGCCTCTGCACCGGCGTTACCTACGATCGTTCCAGCATCCAACGCTGGCTCGACAACGGGAACAACACCTGTCCCGCCACCATGCAGGTTCTCCAAACCAGAGATGTTGTTCCCAACCGAACCTTACACAGCCTCATCCAGATCTGGTCTGACTCGCTCCGTCACCGTCTCGACTCGCCCGACTCACACGACTCACCTACCTCCACCGACTCCGAATCATCCCCCTCCAAGGACCAAATCCTCCTCGCTATCTCCGACTTGCAGACTCGCTGCGACAACCGCTTCGACTCGCTCGCGCTAATCGCGCGTTTCGCCCAGGATTCCGAAGAGAACCGCGATTTTCTCGTCAGAACGGAATGCTTTGTTCCGATGCTGGTTGGCTTCCTAGACAATGTCAATGGCGGCGTCGAATTCCTCGAACAGGTCGTTACGACGTTGGATTTGGTAATCAGCAAAATGGAAGATCGCGAGGGGCTGAAAAACTTGATACTCAAGAGCCAGAGCGAGGGGCGAAAACAGAGCGTAGCTTCTCTGCTTCTCGTTCTGCAACAAGGAAGCCATGCCTCAAAAATCGCATCGGCTAGGGTTTTGAAATCCGTAGCCGTGGACGCGGAATCGAAGCTGTTGATAGCGGAAAAGGAAGGTTTAGTATCCGAATTGCTGAATCTAATCACGCCGGAGAAAGAGCTGGATCTAATCGAGAACTGTTTGTCGTGCCTGGTTTCAATTTCGACGCCGAGACGGAGCAAGATTAGGCTGGTGCGTCTCGGAGCGGTGAAGGTGTTATCGAACCTTCTTCTATCGGCTGCGAGCTTGAGCGTGTCCGTGACGGAGAAGGTTCTGAAGCTGGTTGAAACGGTGTCGTCTACGAAGGAAGGGAGGACGGAGATATGCGAGGATTCAGCGTGCGTGGCGGCGATAGTGAACAAGGTGCTGAAAGTTTCGAGCGTGGCGACGGAACACGCCGTGACGACGCTGTGGAGTGTGTGTTATCTGTTTCGGGATCAGAAGGCGCAAGAGGCGGTTACGAAGGCTAACGGATTGACGAAGATTCTGCTTCTGATGCAGAGCAATTGCTCGCCGCAAGTGCGTCAAATGTCTTCAGATTTGCTTAAGATATTTCGGGTTAATTCTAAGTCGTGTCTTTCCTCTTATGACACCAAAACCACTCATATTATGCCCTTTTGA 1269 0.5256 MVRDDLYIPVPSFFRCPISLDVMKSPVSLCTGVTYDRSSIQRWLDNGNNTCPATMQVLQTRDVVPNRTLHSLIQIWSDSLRHRLDSPDSHDSPTSTDSESSPSKDQILLAISDLQTRCDNRFDSLALIARFAQDSEENRDFLVRTECFVPMLVGFLDNVNGGVEFLEQVVTTLDLVISKMEDREGLKNLILKSQSEGRKQSVASLLLVLQQGSHASKIASARVLKSVAVDAESKLLIAEKEGLVSELLNLITPEKELDLIENCLSCLVSISTPRRSKIRLVRLGAVKVLSNLLLSAASLSVSVTEKVLKLVETVSSTKEGRTEICEDSACVAAIVNKVLKVSSVATEHAVTTLWSVCYLFRDQKAQEAVTKANGLTKILLLMQSNCSPQVRQMSSDLLKIFRVNSKSCLSSYDTKTTHIMPF 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2106 422 PANTHER WDSAM1 PROTEIN 4 422 IPR045185 GO:0061630
Aed5g2106 422 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 86 IPR013083 -
Aed5g2106 422 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
Aed5g2106 422 CDD RING-Ubox_PUB 14 56 IPR045210 -
Aed5g2106 422 SUPERFAMILY ARM repeat 120 402 IPR016024 -
Aed5g2106 422 Pfam U-box domain 10 78 IPR003613 GO:0004842|GO:0016567
Aed5g2106 422 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 27-RELATED 4 422 - -
Aed5g2106 422 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Aed5g2106 422 Gene3D - 112 410 IPR011989 -
Aed5g2106 422 SUPERFAMILY RING/U-box 5 78 - -
Aed5g2106 422 MobiDBLite consensus disorder prediction 84 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2106 Aed-Chr5 23405487 23406755 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2106 1 422 U-box Gene Family AT5G64660 52.778 6.33e-144 415
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2106 - - gmx:100799627 687.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g2106 5 23405487 23406755 Aed5g2106 5 23405487 23406755 ECH