Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2101 ATGGATTTTGAGCAATTTGATTACTCATTTGGCCCTCCTTACCTGAATGAGTGTATCTCAGAAAATGCATTTCCATTTCAAACAGAAGAAGATCTTCTTTCAGCAAATATCATCCTGGATGAAATGTTTGATCGACATGAGTCCATAGAAGAATTGCTGCAGCAACACACAATGGATCATAGTAATAATACTACTACAGTGGATCTAGAAACTGAATTGTGTCATGGATTCACCCCTCATCATGCAGAGGAAAATGTGAATGTTTCAATGGAAGAAGGAGATTCTTCTTCTTTGAAGGGAATCCAAGCAGAGCTAATGGAAGAGACTAGTTTAGCTGATCTCTTGCTAACAGGAGCTGAGGCTGTTGAAGCACAGAACTGGGCCCTTGCTTCACACATAATTCAGAAACTTAACAATGCTTCCTCATCTTCAGAAAATGGTGATGGTTTGTTGAACAGGTTGGCTCTTTTCTTTACTCAGGGTCTGTATTCTAAAACTACAAATGCCACTGAATTGCTTCTAGAGTGTGTTTCCACACACACAAATGCTTTCTGTGTGTTTCAGATTCTCCAAGAACTCTCTCCCTATGTTAAATTTGCTCACTTCACAGCAAACCAAGCAATCCTAGAAGCCACAGAAGGTGTTGAGAATGTTCACATCATTGACTTTGACATCATGGAGGGGATTCAATGGCCACCCTTGATGGTTGACCTTGCAATGAGAAAAAGTGCTACTTCCCTTAGAGTAACAGCCATCACAGTATACCAAAGAGGTTCTGCTGCTTCTGTTCAACAAACAGGAAGAAGGCTCAAAGAGTTTGCAGCTTCTATCAACTTTCCATTCATGTTTGATCAGATAATGATGGAAAAGGAAGAAGATTTTCAAGGAATTGAGCTTGGTCAAACACAAACACTCATAGTCAACTGTATGATACACCAGTGGATGCCTAATAGGAGCTTCTCATTGGTCAAAACATTCCTGGATGGTGTGACCAAATTGTCCCCAAGGCTTGTTGTTTTAGTGGAAGAAGAACTATTTAATTTTCCTAGGCTTAAATCCATGTCCTTTGTGGAGTTCTTCTGTGAGGCTTTGCATCACTACACTGCACTCTGTGATTCACTTGCTAGTAGTCTATGTGGTAGCCACAAGATGGAGTTGAGAATCATAGAAAAAGAGGTTATTGGGGTCAGAATTTTAGACAGTGTGAGGCAGTTTCCTTGTGAGAGAAAAGAGAGAAAAGTGTGGGAGGAAGGGTTTTATTCCTTAAAAGGATTTAAACGTGTTCCTATGAGTACATGCAATATTTCACAAGCCAAGTTCTTGGTAAGCCTCTTTGGTGGAGGGTATTGGGTCCAATTCGAGAAGGGTAGGTTGGCCTTGTGTTGGAAGTCAAGGCCTTTGACTGTGGCTTCAATCTGGGTACCAAGTACAACGCCTTATCAGAATGACAAGGTCAAATAG 1461 0.4079 MDFEQFDYSFGPPYLNECISENAFPFQTEEDLLSANIILDEMFDRHESIEELLQQHTMDHSNNTTTVDLETELCHGFTPHHAEENVNVSMEEGDSSSLKGIQAELMEETSLADLLLTGAEAVEAQNWALASHIIQKLNNASSSSENGDGLLNRLALFFTQGLYSKTTNATELLLECVSTHTNAFCVFQILQELSPYVKFAHFTANQAILEATEGVENVHIIDFDIMEGIQWPPLMVDLAMRKSATSLRVTAITVYQRGSAASVQQTGRRLKEFAASINFPFMFDQIMMEKEEDFQGIELGQTQTLIVNCMIHQWMPNRSFSLVKTFLDGVTKLSPRLVVLVEEELFNFPRLKSMSFVEFFCEALHHYTALCDSLASSLCGSHKMELRIIEKEVIGVRILDSVRQFPCERKERKVWEEGFYSLKGFKRVPMSTCNISQAKFLVSLFGGGYWVQFEKGRLALCWKSRPLTVASIWVPSTTPYQNDKVK 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2101 486 Pfam GRAS domain family 112 473 IPR005202 -
Aed5g2101 486 PANTHER OS12G0162700 PROTEIN 3 474 - -
Aed5g2101 486 ProSiteProfiles GRAS family profile. 102 474 IPR005202 -
Aed5g2101 486 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 3 474 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2101 Aed-Chr5 23375109 23376569 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2101 111 473 GRAS Transcription Factor Family AT3G03450 32.808 2.08e-45 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Aed5g2101 GRAS 2.6e-83 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2101 - - gmx:100804613 781.171
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g2101 5 23375109 23376569 Aed5g2101 5 23375109 23376569 ECH