Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Aed5g2098 | ATGTATGGTTCAACTTCCTTCACTTCACAACTGGTCCATGACACTAACTCAAGAAAGCTACTCTTTCAACAAGCCAATACCCCAGATGCTGCCATGAGTTACAACACAACAGACTCATCATACTTCAAAGGTCACGACTTCGATGCAAATGTTGTGATGATACTCTCAGTCCTCTTGTGTGCTGTTATTTGCTCACTCGGTTTGAACTCCATCATAAAGTGTGTATTGAGGTGTTCAAACATAGTAATCAGCAACGACCCTTCTAATTCAAATACTGTGAGGTACAACCCTTCACCAAGATTGGCCAACACAGGAATCAAGAAAAAGGCCCTCAAGACTTTTCCCACTGTAAACTACTCAACAGAGGTGAAAGGTTTGGACACAGAGTGTGTTATATGCCTCTCGGAGTTTGCCAATGGTGACAAAGTGCGCATTTTGCCAAAGTGCAACCATGGCTTCCATGTTCGCTGCATTGACAAGTGGCTGAGCTCACACTCGTCATGCCCCAAGTGCAGGCAGTGCCTCATAGAGACTAAGAAAATTGTTGGTTCCCAAGTACAAACTACGGTACTTCCACCTGTGCCAGAAACCATTATAAGGATCCAACCACTAGAACCTGAAGGTTTCGAGCGTAACTATAGGGAATTATGCTAA | 654 | 0.4388 | MYGSTSFTSQLVHDTNSRKLLFQQANTPDAAMSYNTTDSSYFKGHDFDANVVMILSVLLCAVICSLGLNSIIKCVLRCSNIVISNDPSNSNTVRYNPSPRLANTGIKKKALKTFPTVNYSTEVKGLDTECVICLSEFANGDKVRILPKCNHGFHVRCIDKWLSSHSSCPKCRQCLIETKKIVGSQVQTTVLPPVPETIIRIQPLEPEGFERNYRELC | 217 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Aed5g2098 | 217 | PANTHER | RING-H2 FINGER PROTEIN ATL78 | 1 | 217 | IPR044602 | GO:0016567|GO:0016740 | |
| Aed5g2098 | 217 | PANTHER | TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED | 1 | 217 | - | - | |
| Aed5g2098 | 217 | Pfam | Ring finger domain | 129 | 172 | IPR001841 | - | |
| Aed5g2098 | 217 | ProSiteProfiles | Zinc finger RING-type profile. | 130 | 172 | IPR001841 | - | |
| Aed5g2098 | 217 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 93 | 176 | IPR013083 | - | |
| Aed5g2098 | 217 | CDD | RING-H2_PA-TM-RING | 129 | 172 | - | - | |
| Aed5g2098 | 217 | SMART | ring_2 | 130 | 171 | IPR001841 | - | |
| Aed5g2098 | 217 | SUPERFAMILY | RING/U-box | 110 | 179 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Aed5g2098 | Aed-Chr5 | 23352234 | 23352887 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Aed5g2098 | 17 | 176 | C3H Transcription Factor Family | AT3G10910 | 49.383 | 3.42e-46 | 149 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Aed5g2098 | K19040 | - | gmx:100527126 | 356.681 |