Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2092 ATGGATTCGGAGGATTTCCGATCCATACTGGAGAGCGCAGGCGTCGACGTGTGGGCTTTGATGGACGCCGCCATCGCGCTGGCCTCCGTCGACCACGGCCACGAGTTGAAGCGCCGGAGAGATGGAATCGTGGAACGCCTCTACGCCGTGAGTTCGCCGCCTCCGCCACTGTGCATGAACTGCAACGCCGGCAACGGCGGAGAAGAAATCAGGACGCAGAGCAGTCCCTTCGCGGAGGAGGAAAAGGATCCTTTCGGAGGCTTGTTCGACGACGAGCAGATGAAGATTCTAGAAATTAAAGAGCAACTCGAAGACCCTCACCAGTCCGAAGATTCGTTGGTGGAGTTGTTGCAGAATCTAGCAGACATGGATATTACATTCCAAGCGTTACAAGAGACTGACATTGGGAGGCATGTGAATCAGTTGCGGAAGCATTCGTCTAATGATGTTAAGAGATTGGTGAAGATACTCGTCAGGAAGTGGAAGGAAATTGTAGATGAATGGGTGAAGTTTAAGGCACCGGGAGAAACGAGTACTTCTGTCATGGTTGATGACAACTCGCCGCCTCAGCAGAAAATCCTGCAAAATAGGCATCGTCAGATTCCTGATTTTGCATACTCGCCAAATCCACACAGTGAGAGTTTGGGGTCAGAGCGCAACAACATTGAACCACAACAACAAAAACCAAAAGCAATTCCTCGCAAAGAAGCTCCTCCCCCAAAACCATCGCCATCTCCTGCTCCTCCTCAAAACAGACAGAGGGAAGGCAATTATGACCCGGATAGATTTGCTTCGGCGAGAAAACGTCTTCAAGAGAACTACAAAGAAGCTGCAAATGCCAAAAAGCAAAGAACGATTCAAGTGATGGATCTTCATGAGTTACCAAAACCCAAGAATGCCTTATTTGCAAAAAACAAAGGCGGCACCGGGCAGGGAAGGCAATGGTGA 948 0.4989 MDSEDFRSILESAGVDVWALMDAAIALASVDHGHELKRRRDGIVERLYAVSSPPPPLCMNCNAGNGGEEIRTQSSPFAEEEKDPFGGLFDDEQMKILEIKEQLEDPHQSEDSLVELLQNLADMDITFQALQETDIGRHVNQLRKHSSNDVKRLVKILVRKWKEIVDEWVKFKAPGETSTSVMVDDNSPPQQKILQNRHRQIPDFAYSPNPHSESLGSERNNIEPQQQKPKAIPRKEAPPPKPSPSPAPPQNRQREGNYDPDRFASARKRLQENYKEAANAKKQRTIQVMDLHELPKPKNALFAKNKGGTGQGRQW 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2092 315 MobiDBLite consensus disorder prediction 296 315 - -
Aed5g2092 315 ProSiteProfiles TFIIS N-terminal domain profile. 91 168 IPR017923 -
Aed5g2092 315 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 315 IPR044790 -
Aed5g2092 315 MobiDBLite consensus disorder prediction 202 286 - -
Aed5g2092 315 MobiDBLite consensus disorder prediction 255 279 - -
Aed5g2092 315 SMART TFS2_5 96 167 IPR003617 GO:0005634
Aed5g2092 315 CDD TFIIS_I 96 166 - -
Aed5g2092 315 Pfam TFIIS helical bundle-like domain 116 165 IPR017923 -
Aed5g2092 315 Coils Coil 263 287 - -
Aed5g2092 315 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 90 179 IPR035441 -
Aed5g2092 315 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 96 176 IPR035441 -
Aed5g2092 315 MobiDBLite consensus disorder prediction 210 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2092 Aed-Chr5 23309110 23313004 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Aed5g2092 Med26 1.5e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2092 - - gmx:100796457 504.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g2092 5 23309110 23313004 Aed5g2092 5 23309110 23313004 ECH
Aed5g2092 5 23309110 23313004 Aed10g0627 10 5058677 5063097 PCT