Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2085 ATGGACTTCGACGAGTACGAATACCTTGAGAAGACAGTGGATGAAGACATAGATTCCTCCAAGAAGAAGAAGGACATCACTGACAAGACCGAGAGGAGTTACCGGAAGCCCCGCGACGTCGACGACGATCCCGACGCCGATGACCGGAGGAGCAAGAGGTCAAGGGGCGACGACGAGAACGGCGCTTCCAAGAAAGATCGCGACAGAGAGCGTGACCGCGAACGTTCCTCCGGCCGTCACAGGAGCGAGAGGGAGAAAGACGGAGAGAGGAAAGACAGGGATAAGGATAGAGAGAGGAGGGATAAGGATAAAGATAAGGACAAGGATAGAGATAGGGATAGGAGAGACCGTGATAGGGATAGGGATAGGGAGAAGGAGCGCGAGAGAAGAGAGAAGGATAGGGAGCGAGAGAAGGAAAGAGAGGAGCGAGAGAGACCTAGAAGGAGTATGAGTATGAGTCGTCCTGAGAGAGACAGAGACAGGGAGCGAGATTTCGAAATGCGCGATGGCGGCGGCCGGAGATTTAGGGACAAGAAAGATGCTACAGAACCTGAGGCAGACCCTGAAAGGGATCAGAGAACTGTTTTTGCCTACCAGATGCCGCTAAAAGCAACAGAGAGAGACGTGTATGAGTTCTTTTCAAAAGCTGGCAAGGTGAGAGATGTCCGTCTGATCATGGATAGGAACTCAAGAAGATCTAAAGGAGTTGGGTATATTGAATTTTATGATGCGATGTCAGTACCAATGGCTATTGCTCTCTCTGGTCAACTTCTTCTTGGACAACCTGTAATGGTGAAACCTTCTGAAGCTGAAAAGAACCTTGTTCAATCTAACGCTTCTGGTGGAGCGGCTGGTGTAGTTGGGCCCTATGGAGCTGTGGACAGAAAATTGTATGTGGGGAATCTTCACTTCAACATGACTGAGAGTCAGCTGCGGGAGATTTTTGAGCCATTTGGTCCGGTTGAGGTTGTCCAACTGCCTCTTGACTTGGAAACAGGACACTGCAAGGGTTTTGGGTTTGTTCAATTTACTCATCTTGAACATGCCAAGGCTGCTCAGAGTTTAAATGGGAAATTGGAGATTGCTGGCAGGACTATCAAGGTTTCATGTGTAACAGATCATGTGGGAAGCCAGGATACAACTGCAAAATCTGCAGACTTGGATGACGATGAAGGTGGATTGACTTTAAATGCTCACTCAAGAGCGTTGCTTATGCAGAGGCTGGCTGGTGCTGACCCCGCAAACATAGGTTTGCCTGTTGTGAATGGCTCGGTTCCTGCTCAGCAGGCTATTAGCTTGCCTATTGGTGCTCCAGTTCTACCAACGCAAGTTATGCCTAATGCAATGGTAGAACCTGTAGGAAACCCCAGCGAGTGTTTACTTTTGAAGAATATGTTTGATCCTAGCACCGAGACGGAACCAGATTATGACATGGACATTAAAGAGGACGTTGAGGAAGAGTGTTCTAAATATGGACGGGTGAAACATATTTTTGTTGACAAAAAAAGTGCAGGTTTTGTGTATTTGCGGTTTGATACAGTGGAAGCAGCAAGTGGTGCTCAACGTGCAATGCACATGAGATGGTTTGCACGCAGGTTAATTTCAGCTGTGTTCATGCAACCAGAGTTGTACGAAGCCAAGTTTAAAGGGGAAGTTTGA 1659 0.4792 MDFDEYEYLEKTVDEDIDSSKKKKDITDKTERSYRKPRDVDDDPDADDRRSKRSRGDDENGASKKDRDRERDRERSSGRHRSEREKDGERKDRDKDRERRDKDKDKDKDRDRDRRDRDRDRDREKERERREKDREREKEREERERPRRSMSMSRPERDRDRERDFEMRDGGGRRFRDKKDATEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNASGGAAGVVGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDLETGHCKGFGFVQFTHLEHAKAAQSLNGKLEIAGRTIKVSCVTDHVGSQDTTAKSADLDDDEGGLTLNAHSRALLMQRLAGADPANIGLPVVNGSVPAQQAISLPIGAPVLPTQVMPNAMVEPVGNPSECLLLKNMFDPSTETEPDYDMDIKEDVEEECSKYGRVKHIFVDKKSAGFVYLRFDTVEAASGAQRAMHMRWFARRLISAVFMQPELYEAKFKGEV 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2085 552 CDD RRM1_RBM39_like 194 266 - -
Aed5g2085 552 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 193 270 IPR000504 GO:0003723
Aed5g2085 552 PANTHER CC1-LIKE SPLICING FACTOR 1 552 - -
Aed5g2085 552 SUPERFAMILY RNA-binding domain, RBD 295 541 IPR035979 GO:0003676
Aed5g2085 552 Gene3D - 291 387 IPR012677 -
Aed5g2085 552 SMART rrm1_1 296 369 IPR000504 GO:0003723
Aed5g2085 552 SMART rrm1_1 194 266 IPR000504 GO:0003723
Aed5g2085 552 SMART rrm1_1 459 536 IPR000504 GO:0003723
Aed5g2085 552 Coils Coil 121 145 - -
Aed5g2085 552 CDD RRM3_RBM39_like 457 539 - -
Aed5g2085 552 MobiDBLite consensus disorder prediction 13 191 - -
Aed5g2085 552 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 388 475 IPR029123 -
Aed5g2085 552 MobiDBLite consensus disorder prediction 1 191 - -
Aed5g2085 552 Gene3D - 186 280 IPR012677 -
Aed5g2085 552 SUPERFAMILY RNA-binding domain, RBD 186 280 IPR035979 GO:0003676
Aed5g2085 552 TIGRFAM SF-CC1: splicing factor, CC1-like family 84 548 IPR006509 GO:0003723|GO:0005634|GO:0006397
Aed5g2085 552 CDD RRM2_RBM23_RBM39 297 369 - -
Aed5g2085 552 Gene3D - 454 551 IPR012677 -
Aed5g2085 552 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 295 373 IPR000504 GO:0003723
Aed5g2085 552 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 481 534 IPR000504 GO:0003723
Aed5g2085 552 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 200 262 IPR000504 GO:0003723
Aed5g2085 552 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 297 367 IPR000504 GO:0003723
Aed5g2085 552 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 552 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2085 Aed-Chr5 23264079 23269947 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2085 280 368 Eukaryotic Initiation Factors Gene Family AT4G34110 40.000 8.52e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2085 K13091 - gmx:100793461 725.317
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g2085 5 23264079 23269947 Aed10g0623 10 5005191 5015949 PCT